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more ./log/validation/1-20190403-PXD013343-RESUB-0001-validation.log
qsdb-3_comprehensive-blib_5ppm.mzid:
Encountered an error executing the step
java.io.IOException: ERROR
at uk.ac.e…
germa updated
5 years ago
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Hi all,
I was trying to validate files output from Percolator from the crux-toolkit (using the option `--mzid-output T`). I'm using Java 1.8.0-openjdk on ubuntu 18.
```
$ /usr/lib/jvm/java-1.8…
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Submitted by hendrikweisser on 2013-07-09 11:21:02
The PRIDE repository uses an XML format to store raw data and identifications together (see http://www.ebi.ac.uk/pride/schemaDocumentation.do).
It w…
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at eu.isas.peptideshaker.gui.export.MzIdentMLExportDialog.insertProjectData(MzIdentMLExportDialog.java:109)
at eu.isas.peptideshaker.gui.export.MzIdentMLExportDialog.(MzIdentMLExportDialog.java:74)
…
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Ticket number - 1-20190116-152756-RESUB2
LSF report says -
File name | #Proteins | #Peptides | #Spectra | #Unique PTMs | #Delta m/z % | #Identified spectra | #Missing identified spectra | Missin…
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as discussed in #2495, it would be much better to have a defined interface for common operations on `vector` or `vector`.
All occurences could (gradually) be replaced by the new classes (one for `vec…
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Despite choosing the setting instrument = low_res the Q Exactive settings are used by MSGF+, see screenshot.
 has a PRIDE submission issue with a .mzid file generated by PeptideShaker 1.16.36 .
The file "secretome_290316_pride_submission.mzid" starts with
...
…
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Hi;
We need terms for the following tools and their scores:
**MSFragger**
**PeptideProphet**
- peptideprophet probability
**ProteinProphet**
- proteinprophet score
- protein group …
prvst updated
5 years ago
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Hi,
I'm having a issue with the msgf2pin converter that I've not come across before, involving duplicate values.
The error is:
XML parser error at C57_F_1_target.mzid:2026098:166
error: element …