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Perhaps RNeXML has a built-in expectation for the abbreviation of the NeXML namespace? The following lines result in an error, complaining about the `ns` namespace:
``` xml
```
This shouldn't re…
hlapp updated
9 years ago
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Author Name: **Chris Fields** (@cjfields)
Original Redmine Issue: 3208, https://redmine.open-bio.org/issues/3208
Original Date: 2011-04-19
Original Assignee: Bioperl Guts
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Per the subject.
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There are currently strings in the propinquity output that look like "pg_2608_tree6288". While technically correct, since they will be documented as being opaque, I would like to see them changed.
I …
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I tried the following code to parse the nexml (stored as [test.xml](https://raw.githubusercontent.com/xu-hong/rphenoscape/master/inst/examples/test.xml)) returned by the [OntoTrace API](http://docs.ph…
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@EDiLD and @cboettig hoping to get your feedback on this
I've been playing with some code to think about how to specify taxonomic data in a more rigorous way. Of course there is no standard like _XM…
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Page stored at http://nexml.github.io/manual is missing. 404 error is returned.
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The validator and other shim/conversion services are going to be hosted at Naturalis. Links on the website will have to be updated once the URLs for these services will be known (most likely: nexml.na…
rvosa updated
9 years ago
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The NeXML generated by OntoTrace includes taxon identifier annotations for OTUs using the `dwc:taxonID` metadata attribute. There should also be an identifier annotation for characters (`` elements in…
hlapp updated
9 years ago
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If I give an `XMLInternalDocument`object as input x,
the `nexml_read(x)` will raise:
Error in as.vector(x, "character") :
cannot coerce type 'externalptr' to vector of type 'character'
This is bec…
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According to the NeXML schema, `polymorphic_state_set` elements should have a `symbol` attribute.