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Hi @junyuchen245 , nice collection of transformers for medical imaging.
We have open-sourced UNETR in the following repository:
https://monai.io/research/unetr-btcv-multi-organ-segmentation
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**Is your feature request related to a problem? Please describe.**
Add UNETR repository for various tasks such as 3D multi-organ segmentation using BTCV dataset. The model is based on:
- UNETR based…
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Caught exception printing response {"sentences":[{"begin":0,"end":140,"write_sentence":true},{"begin":140,"end":310,"write_sentence":true},{"begin":311,"end":327,"write_sentence":true},{"begin":328,"e…
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It shall be great if scribbles work independently of previous model output.
Currently it depends on logits collected through previous segmentation action.
It will be ideal if we can make it work b…
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I've noticed that Cytokit segmentation performs poorly on some CODEX datasets. Is there a way to change a threshold that tells which nuclei are allowed to pass. Or maybe there are some other parameter…
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hi, i was reading your work done in "automated analysis of CMR images", its great indeed. i am also working on multi organ segmentation, i have an issue in conversion of long axis images in short axis…
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Hello,
I am using ANTs for an Atlas creation of MRI masks of organs around the thyroid. I have got a good enough result with 10 iterations using the following command:
`/antsMultivariateTemplat…
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Hi, Jun, perfect and selfless work, and admire you.
I hope that the paper will be published as soon as possible!
Can I ask you two questions?
Q1: in “4.2 Semi-supervised organ segmentation benchmar…
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Hi there,
Thank you so much for your awesome work!
I have one questions related to the training of the signed distance map described in "Shape-Aware Organ Segmentation by Predicting Signed Dista…