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hammerlab
/
cytokit
Microscopy Image Cytometry Toolkit
Apache License 2.0
115
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18
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Example file didn't work well
#43
d1015
opened
1 year ago
1
Bump distributed from 1.28.1 to 2021.10.0 in /python/pipeline
#42
dependabot[bot]
opened
2 years ago
0
how to generate a template configuration file?
#41
amcrab
opened
2 years ago
3
Bump numpy from 1.16.0 to 1.22.0 in /python/pipeline
#40
dependabot[bot]
opened
2 years ago
0
Bump dask from 1.0.0 to 2021.10.0 in /python/pipeline
#39
dependabot[bot]
opened
2 years ago
0
Bump opencv-python from 3.4.3.18 to 4.2.0.32 in /python/pipeline
#38
dependabot[bot]
opened
2 years ago
0
Bump opencv-python from 3.4.3.18 to 3.4.7.28 in /python/pipeline
#37
dependabot[bot]
closed
2 years ago
1
Is there a way to change threshold for nucleus segmentation?
#36
VasylVaskivskyi
closed
2 years ago
15
Issue Executing marker_profiling_example.ipynb
#35
r0f1
closed
3 years ago
5
Fail to download data
#34
sunaifei
opened
3 years ago
4
'int' object has no attribute 'auto_restart'
#33
akashparvatikar
closed
3 years ago
2
file not found error
#32
akashparvatikar
closed
3 years ago
3
Model shape error
#31
VasylVaskivskyi
closed
4 years ago
1
Upgrading Python
#30
mkeays
closed
4 years ago
2
thoughts on adding cellpose based segmentation
#29
Reardonlab
opened
4 years ago
1
CytoKit for other multiplexing methods
#28
NieHauLab
opened
4 years ago
5
Cytokit UI not loading
#27
ninning
opened
4 years ago
4
Using membrane channel for cell boundary segmentation
#26
mdayao
closed
4 years ago
2
Outputting ROI polygon info
#25
mkeays
closed
4 years ago
2
Tensorflow DType error
#24
ninning
closed
4 years ago
2
Using more than two GPUs
#23
mkeays
closed
4 years ago
4
MySQL Error - Improve Selection of plane
#22
jesusdpa1
opened
4 years ago
2
Tensorflow not downloading the NN
#21
jesusdpa1
closed
4 years ago
3
IndexError: too many indices for array
#20
mkeays
closed
4 years ago
2
Compute Error due to Memory Error
#19
jesusdpa1
closed
4 years ago
9
Difficulties running cytokit on codex data
#18
jesusdpa1
opened
4 years ago
6
cells at tile edges
#17
mkeays
closed
4 years ago
2
UserWarning: truncating ImageJ file
#16
mkeays
closed
4 years ago
3
Error during analysis step
#15
mkeays
closed
4 years ago
13
Error during preprocessing
#14
mkeays
closed
4 years ago
7
Imaging mass cytometry
#13
mkeays
closed
4 years ago
2
CODEX BALBc1 not available
#12
jesusdpa1
closed
4 years ago
10
running marker_profiling_example
#11
AlexBouz
closed
4 years ago
4
use DOI link instead of bioRxiv to always point to the up-to-date manuscript
#10
armish
closed
4 years ago
0
Make example data sets public
#9
armish
opened
6 years ago
3
Document how to use cytokit on gcloud
#8
armish
opened
6 years ago
0
Processor statistics and QA analysis
#7
eric-czech
closed
6 years ago
0
Add Processing Step Statistics
#6
eric-czech
closed
6 years ago
2
Segmentation Methodology
#5
eric-czech
opened
6 years ago
1
Adding CI and lint
#4
eric-czech
closed
6 years ago
0
Set up CI for automated testing/linting
#3
armish
closed
6 years ago
1
Initial codex processor CLI implementation
#2
eric-czech
closed
6 years ago
0
Implementation of CODEXProcessing on GPU
#1
eric-czech
closed
6 years ago
4