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#### What analysis module should be updated and why?
PBTA vs TCGA TMB analysis In the works by @cansavvy #548 based on #551 and/or #257
#### What changes need to be made? Please provide enoug…
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I ran the following to create the infercnv object (I don't have any reference cells so I set ref_group_names = NULL as suggested by the wiki):
infercnv_obj = CreateInfercnvObject(raw_counts_matrix=…
s2hui updated
3 years ago
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In case of re-run, it is either customer request, resequencing, bioinformatic workflow update, or just good old re-upload of data.
To begin with, I think it'd be useful to preserve some information…
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Problem:
Unable to start balsamic automatically since bed version is missing. I am unsure if this is cg or status-db related so I also tag @patrikgrenfeldt
```
Case justshrew has following BALS…
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Besides being able to know which filter was used to generate the report, I'd like to also be able to see a table of variants in the report. For rare diseases this doesn't matter much, right? But for c…
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Running samples that have RNA that is not supposed to go through BALSAMIC return permission denied error and exit code 1 which breaks downstream scripts.
Reminder: If it is tumor RNA, it should als…
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I'd like to use MONDO and HPO together with a reasoner. This doesn't seem to be possible at the moment. Here's an example:
## [Adenocarcinoma of the colon](http://purl.obolibrary.org/obo/HP_0040276…
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Meeting room link to follow on email.
Agenda items and discussion topics are welcome!
- New features
- Bug debriefings
- New developers
- Reports from pipeline development
- Progress on server…
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https://mp.weixin.qq.com/s/VOcwQ8hAgQqetpKpeHKYpQ
ixxmu updated
3 years ago
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https://mp.weixin.qq.com/s/rK7FFQuEPKpEU6qYbVB4Rw
ixxmu updated
3 years ago