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Hello, I am concerned about the work you do, and then I try to use my data, but the data under your data file, I do not quite understand what it means, can provide a data description? For example, dat…
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Hi. Sorry if here Isn't the right place to post this question. I thought the group in Gmail might be too flooded because of the whole code.
I'm trying to do something like the example [13.4 Phyloge…
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Hi Mette,
I am using the function of Bindetect. Where can I get my motif file? and also what is the bed file that containg all the peaks? how can I get? I am sorry. I am quit new to coding.
Best w…
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**Describe the bug**
I use macs2 callpeak to do peak finding for Chip-Seq data. I notice there are something wrong happen when *.bed results were output.
**To Reproduce**
> I use code as followin…
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new TF binding motif to add
5ʹ-CGNMGATCNTY-3
Loz1
https://www.ncbi.nlm.nih.gov/pubmed/31515876
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Hello. Can you please explain what the data in the BED results file mean? In a line like this:
`chr20 73636 73637 3 11.54 + [score_CL=25.1365;score_E=11.54;score_B=36.6765;score_UC=11.54]`
What …
anmej updated
4 years ago
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/saezlab/dorothea
Confirm the following by editing…
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The MF terms
GO:0017091 AU-rich element binding
and
GO:0035925 mRNA 3'-UTR AU-rich region binding
currently seem to overlap in meaning, as exact synonyms for 'AU-rich element binding' inc…
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Hello Mette,
Thanks again for the TOBIAS software, we are finding it very useful for our project. This time around we had a question regarding the output in Fig 2 of the preprint, clustering TFs b…
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Hi, we want to use MixMHC2pred to predict candidate HLA-II neo-peptide from NGS data. As you mentioned in README "The score returned (%Rank, column 3) corresponds to a percentile rank (best score is 0…