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User will be able to submit an input form with multiple genes. The correlation analyzer will conduct analysis ONLY among the input genes, ignoring any sort of correlation analysis with the complement …
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Dear Nanoporetech,
I am having an issue running this. I have altered the config.yaml (pasted below). I read an another issue that full paths were required so I added these, but have removed identi…
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Hi! Afrendeiro!
I am using NuMap to produce phasogram. There are two files called phasogram:
1. ./MNase_seq_analysis/dist_plots/whole_genome/phasogram.txt
0 12820795 3114419 853573 278341 10795…
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Hi, I can generate genome from STARconsensus pipeline using this command
```
STAR \
--runThreadN 15 \
--runMode genomeGenerate \
--genomeDir $star_genome_outdir \
--genomeFastaFiles $ref_fasta…
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@rawnakhoque I asked the PDF in our lab and he showed me that everything has been done in bash. Follow the installation and basic configuration step by step [here](http://homer.ucsd.edu/homer/introduc…
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Dear Aldy Team,
I analyzed targeted sequencing data of 100 PGx genes aligned to the hg19 reference genome using both BAM and VCF files in Aldy v4.4 (Python 3.9.7 on Linux 3.10.0-1160.95.1.el7.x86_6…
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Hello,
I'm currently working on Mycobacterium caprae and Mycobacterium bovis. These subspecies of the M. tuberculosis complex are phylogenetically very similar, so the task of identifying them is n…
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Thanks for the good material. I have a question about the alignment using bowtie2, here according to [`mutation_sequencing_analysis_script.sh`](https://github.com/aldob/iMUT-seq/blob/4476db76f2058d0af…
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Hi,
Thanks for developing this smart tool. I am currently working in a species with a phased genome, which can easily provide haplotype information. We also have enough population genotype data. In …
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Hi Felix,
I have a couple of questions regarding Bismark. I'm sorry if they are stupid questions; I am fairly new to WGBS data and Bismark analysis (or to bioinformatics in general).
We are rese…