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It's missing from studies e.g. blca_tcga, brca_tcga_pub2015, thca_tcga and more.
We used to auto-generate the case list _cnaseq ("Tumor Samples with sequencing and CNA data") when importing.
jjgao updated
6 years ago
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Originally reported by @rexwangcc on Slack. When the indexer tried to index the `gcp` copy of a bundle submitted to the `aws` replica earlier, it reported one of the blobs, the one for `biomaterials.j…
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the values showing in the parenthesis are not correct in facet drop downs
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_**Please consider a new term for numbness.Observed in Glioblastoma.PMID:28640706.
Superlass:Paralysis??**_
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In https://www.bioconductor.org/packages/3.7/bioc/vignettes/maftools/inst/doc/maftools.html, caner type LAML was used as an example. How can I use mat fools for other cancer types such as Breast Cance…
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SOID terms contain sequence ontology root concept as "parent". Is this the intended behavior?
It looks like this was implemented by @mayfielg [here](https://github.com/ohsu-comp-bio/g2p-aggregator/…
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Steps to reproduce
1. Open list of all cell lines
1. Stratify by tumor type
1. Collapse all tumor types
The values of the tumor type column are now for instance astrocytoma/glioblastoma (50…
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As originally implemented, the "search" box on the CTD2 Dashboard web page returns results independently for each subject term entered; this is a logical "OR" operation. The search results are present…
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When there are no search terms entered, show some examples of what you might search for. Try to show off a broad range of functionality.
We can get some examples from user-test subjects.
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When you customize the bar configuration so that the y-axis displays absolute counts, a few things on the chart mess up
- The slider max value of the "Min. # Altered Cases" slider becomes incorrect
…