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See https://github.com/samtools/htslib/issues/593#issue-259627325 for context.
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```
gcc --version
gcc (Homebrew gcc 5.3.0) 5.3.0
```
```
In file included from src/fqheader.h:21:0,
from src/fqfile.c:14:
/usr/include/zlib.h:1324:21: note: expected 'gzFile {aka str…
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Hi,
I am a newby and I was trying to install katuali following the instruction. I think I got it right until the setup of the environment. I was then running the _make test_ but I get lots of "warn…
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- [x] Build pkgs
- [x] Release to devel channel
- [x] Test
- [ ] Release to prod channel
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Good day!
Is it possible to take into account a case when prerequisites (for example, htslib library) are already installed on my own? A "rigid" installation of these packages there leads to a prob…
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gcc -Wall -O3 src/matlock.c src/matrix.o src/bam_filt.o src/count_motif.o src/dna.o src/read_count.o -Ihtslib -Isrc htslib/libhts.a -lbz2 -llzma -lz -lm -lpthread -lgsl -lgslcblas -o bin/matlock
/us…
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Hi Aron,
As we have all our genomic fasta gziped for using with bwa, I was wondering if bedtools getfasta can work with gzipped data.
Pablo.
pamag updated
5 months ago
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Bgzf blocks have an extended gzip attribute for compressed data (in bytes). This is usually 2 bytes to store a number as large as 65536 - the maximum size for a compressed bgzf block. However if you c…
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Hi,
I have begun some work to bump htslib version to 1.21 in Debian and noted a couple of failing items in [Debian bug#1087457] affecting the last release 0.22.1 of pysam when bumping the htslib ve…
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I am interested in deriving the avg_distance_to_effective_5p_end value utilizing the data from the avg_distance_to_effective_3p_end column.
Is there any plan to provide the avg_distance_to_effectiv…