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genome
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bam-readcount
Count bases in BAM/CRAM files
MIT License
298
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95
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NUL (\x00, ^@) and other control characters in output
#107
Kaddea
opened
2 months ago
4
conda version different than github
#106
complexgenome
closed
10 months ago
1
Questionably long runtime for RNA BAMs vs. DNA BAMs?
#105
seetarajpara
closed
1 year ago
0
Interpretation of indels
#104
sakshamphul
closed
1 year ago
2
read depth incorrect
#103
bioscienceresearch
closed
2 years ago
2
Compilation Issue
#102
KevinYie
opened
2 years ago
3
Reported depth not matching
#101
jcgrenier
closed
2 years ago
6
Issue on installation
#100
idoit4fun
opened
2 years ago
0
fatal error: compilation failed
#99
smoretti
opened
2 years ago
1
Identify reads aligned to mutant and wild type sequences
#98
rpauly
closed
2 years ago
1
Badge
#97
sridhar0605
closed
2 years ago
0
`bam-readcount` build from release source code zip/tarball does not have a version number
#96
apldx
opened
2 years ago
0
Unix conv help message edits
#95
sridhar0605
closed
2 years ago
0
help message edits
#94
sridhar0605
closed
2 years ago
0
Version and Author contri patch
#93
sridhar0605
closed
2 years ago
0
how to get the site list for indels?
#92
breezetown
opened
2 years ago
3
Add tutorial
#91
apldx
closed
2 years ago
0
how to get a region file
#90
stroke1989
closed
2 years ago
3
Support for BAM CSI index
#89
f-huber
closed
2 years ago
1
Error when path_to_bam have bam in middle
#88
sssimonyang
opened
2 years ago
0
Inconsistent output
#87
mnshgl0110
opened
2 years ago
2
WARNING
#86
stroke1989
closed
2 years ago
3
Reason for low coverage output for deepseq data
#85
YashaNazirB
opened
2 years ago
5
[JOSS REVIEW] Any functionality documentation?
#84
bebatut
closed
2 years ago
2
[JOSS REVIEW] Missing the community contribution guidelines
#83
bebatut
closed
2 years ago
2
[JOSS REVIEW] minor edits to the manuscript
#82
friedue
closed
2 years ago
3
[JOSS REVIEW] Minor edits to the github-based documentation
#81
friedue
opened
2 years ago
3
[JOSS REVIEW] Example usage
#80
friedue
closed
2 years ago
6
[JOSS REVIEW] docker documentation
#79
friedue
closed
2 years ago
3
compilation failed
#78
lmanchon
opened
3 years ago
5
Make Error for boost on MacOS
#77
chintan-vora-tfs
opened
3 years ago
4
Move Docker docs to top of README
#76
apldx
closed
3 years ago
0
Compilation fails because of missing -fPIC
#75
SethosII
closed
3 years ago
2
Add Docker and clean up
#74
apldx
closed
3 years ago
0
Samtools 1.10
#73
seqfu
closed
3 years ago
1
Only counting multiple aligned reads for one chromosome with "-l *.bed" and "-q 0" parameters
#72
Adglink
opened
3 years ago
5
fpfilter.pl - failed to get readcounts for variant allele
#71
Souzavgp
opened
3 years ago
0
Fail to open BAM file –q
#70
Souzavgp
closed
3 years ago
3
Max depth 8000
#69
LauraVP1994
closed
2 years ago
1
Getting the read names/ IDs?
#68
ghost
opened
4 years ago
4
Distance to both 5' and 3' ends
#67
matnguyen
opened
4 years ago
0
Is there a recommended citation for this tool?
#66
whtns
closed
4 years ago
1
Update included samtools and boost
#65
serge2016
opened
4 years ago
3
Run without errors but failed to produce the site list
#64
drtamermansour
opened
5 years ago
8
missing avg_distance_to_effective_3p_end
#63
stemangiola
opened
5 years ago
0
Feature request: Request for unmapped region option
#62
ankit4035
opened
5 years ago
2
fail to load bam index
#61
mcfog1
closed
5 years ago
0
make test fails RunBamReadcount (python vs python2)
#60
darked89
opened
5 years ago
0
Update bioconda deployment to Python3.7
#59
MatthewPorterGN
opened
5 years ago
2
print-individual-mapq not working
#58
fkokocinski
opened
5 years ago
2
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