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genome
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bam-readcount
Count bases in BAM/CRAM files
MIT License
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a question of how to use bam-readcount on insertions?
#57
rayliu0115
closed
5 years ago
1
[bam_plp_destroy] memory leak: 1. Continue anyway.
#56
jflucier
opened
6 years ago
1
Inconsistent output when run with or without bed file for regions
#55
juliandangelo
opened
6 years ago
0
Deletion counts behaviour
#54
iranmdl
closed
6 years ago
3
Update max_warnings to 10
#53
colindaven
closed
3 years ago
0
List of base pair quality
#52
aziouez25
opened
6 years ago
0
read count limit 8000
#51
snuernberg
closed
4 years ago
3
index not found for gatk output
#50
crazyhottommy
opened
6 years ago
1
Problem on Intallaion of bam_readcount
#49
bioinfo-dirty-jobs
opened
6 years ago
0
speed improvements
#48
duartemolha
opened
6 years ago
11
no output when running with -l varscan data
#47
splaisan
closed
6 years ago
1
are soft-clipped bases counted for the depth?
#46
iranmdl
closed
6 years ago
7
Filteriing paired end data
#45
ktroule
closed
7 years ago
2
--site-list option is not working
#44
ycl6
opened
7 years ago
4
what's the meanning of "avg_distance_to_q2_start_in_q2_reads “ ?
#43
zeronot
opened
7 years ago
0
detailed format to calculate "avg_sum_mismatch_qualities" ?
#42
zeronot
opened
7 years ago
1
make error
#41
fwks
opened
7 years ago
1
Different alignment of indels in DNA and RNA
#40
nilsrudqvist
closed
6 years ago
6
CIGAR error
#39
avilella
closed
7 years ago
1
Improve per library documentation
#38
bainscou
closed
7 years ago
0
min-base-quality not giving expected output (also on biostars)
#37
sheenamt
opened
7 years ago
2
Non -ACGTN counts
#36
iranmdl
opened
7 years ago
7
compiling error
#35
kaji331
opened
7 years ago
1
bam-readcount
#34
xiezhan
opened
7 years ago
1
Is it possible to output read count based on strandness
#33
crazyhottommy
closed
6 years ago
0
Compilation error with abs function in BasicStat.cpp
#32
germelcar
closed
8 years ago
1
Fix segmentation fault when BAM file does not exist
#31
sambrightman
closed
8 years ago
2
Running without a region doesn't work
#30
ernfrid
opened
8 years ago
4
bam-readcount
#29
huiyu3892
closed
8 years ago
1
Missing LICENSE file
#28
mmokrejs
closed
8 years ago
1
Spanning deletions aren't included in depth calculations
#27
ernfrid
opened
8 years ago
0
VarScan fpfilter returning no results
#26
ernfrid
opened
8 years ago
2
A error report about bam-readcount
#25
WinterLi1993
opened
8 years ago
3
Does not report results for some 1-position regions
#24
IgorFobia
opened
8 years ago
5
pre-build dependency handling
#23
tabbott
closed
9 years ago
6
Parallel make fails
#22
sjackman
closed
9 years ago
4
`make install` ignores CMAKE_INSTALL_PREFIX
#21
sjackman
closed
9 years ago
2
Updated the bam-readcount command line 'usage' information
#20
morgantaschuk
closed
9 years ago
2
max depth still 8000 with -d set up
#19
trptyrphe11
opened
9 years ago
4
Support for CRAM
#18
smacarthur
opened
9 years ago
8
use c++0x to fix segfault on Mac
#17
ernfrid
closed
9 years ago
1
Quit spewing millions of warning messages by default
#16
ernfrid
opened
9 years ago
1
bam-readcount does not install on centos 5
#15
dnjiao
closed
8 years ago
2
Feature Request: Specify Flags to Include/Exclude
#14
ernfrid
opened
9 years ago
3
Feature Request: Statistics per strand
#13
smacarthur
opened
9 years ago
3
segmentation faults on OSX 10.9.2 with Samtools 0.1.19-44428cd
#12
lordzappo
closed
9 years ago
10
bugfix: make sure indel queue gets cleared
#11
tabbott
closed
10 years ago
0
fix gtest issues w/recent OS X compilers
#10
tabbott
closed
10 years ago
0
does not compile on OSX 10.9.2 with Samtools 0.1.19-44428cd
#9
lordzappo
closed
10 years ago
10
boost not listed as a dependency but required for building
#8
hstehr
closed
10 years ago
1
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