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---
id: xpp
version: "8.0"
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_XPP/d463c2014982d702c7d17e1012bf2b02a0d16e4d/biosimulators.json
specificationsPatch:
versi…
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This would be a good problem to add given its popularity. It would make for a better example than Brusselator for the README since the parameters have meaningful names (`deathRate` and `birthRate` vs…
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---
id: gillespy2
version: 1.6.6
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_GillesPy2/5bc94cdc47050040af1877b730aeda550b442ac6/biosimulators.json
specificationsPa…
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While replicating the Lotka-Volterra model in pycharm, I am getting error at this point:
Traceback (most recent call last):
File "/home/harshita/PycharmProjects/Project_ICL_lotkaVolterra/yaml_2_pe…
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Dr.Tyler,
Sorry to bother you. Here I found a error when I run the function:
CompositionalLotkaVolterra(P, T, U, pseudo_count=1e-5)
That is:
clv = CompositionalLotkaVolterra(P, T, U, pseudo_count=…
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The following 30 example simulation runs did not succeed:
Budding yeast cell cycle (Irons, J Theor Biol, 2009; SBML-qual; BoolNet; synchronous) (61babc980ed8ec0655971d6f)
Simulation results could not…
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---
id: boolnet
version: 2.1.5
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_BoolNet/f5d962f7b2446343056296da21102cb252730509/biosimulators.json
specificationsPatch:…
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---
id: bionetgen
version: 2.7.0
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_BioNetGen/8797d697db23129249163f8168a9721796f29ddc/biosimulators.json
specificationsPa…
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---
id: ginsim
version: 3.0.0b
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_GINsim/0734c70461375709732c4ddec0d37c76a2263e66/biosimulators.json
specificationsPatch:
…
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---
id: amici
version: 0.11.22
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_AMICI/460914379bed17bf9ee1221c4ffecab69b2f52c1/biosimulators.json
specificationsPatch:
…