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ICB-DCM
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pyPESTO
python Parameter EStimation TOolbox
https://pypesto.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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CI: don't cache amici; pytest ignore amici_models; passenv BNGPATH
#1523
dweindl
opened
1 hour ago
1
Don't modify sys.path for amici model imports
#1522
dweindl
opened
18 hours ago
1
Fix test_deepcopy_objective, test_preeq_guesses
#1521
dweindl
closed
17 hours ago
1
test_deepcopy_objective fails
#1520
dweindl
opened
1 day ago
0
Exclude nlopt==2.9.0
#1519
dweindl
closed
1 day ago
1
Fix `NLoptOptimizer.__repr__`
#1518
dweindl
opened
1 day ago
1
Improve exception-handling in SacessOptimizer
#1517
dweindl
opened
1 day ago
1
Update CODEOWNERS
#1516
stephanmg
opened
4 days ago
2
Visualize: fix flatten of observable mapping with one observable
#1515
Doresic
opened
6 days ago
3
Fix handling of PEtab fixed parameters
#1514
dweindl
closed
6 days ago
1
Select: add store/load to notebook; replace visualization code with PEtab Select implementations
#1513
dilpath
opened
1 week ago
0
Improve exception-handling in SacessOptimizer
#1512
dweindl
opened
1 week ago
0
`test_correct_startpoint_usage[34-nlopt]` fails
#1511
dweindl
opened
1 week ago
2
Fix ESSOptimizer min of empty sequence
#1510
dweindl
closed
1 week ago
1
PEtab: Fix warning from `fill_in_parameters` with fixed parameters
#1509
dweindl
closed
1 week ago
1
Bump codecov/codecov-action from 4 to 5
#1508
dependabot[bot]
opened
1 week ago
1
Add test problems to package
#1507
dweindl
opened
1 week ago
0
Doc: extend scatter search documentation
#1506
dweindl
closed
1 week ago
1
Hierarchical: remove inner datas from relative calculator
#1505
Doresic
closed
2 weeks ago
1
Hierarchical: fix no error if inner observable parameter in noise formula & viceversa
#1504
Doresic
closed
2 weeks ago
1
ESSOptimizer: Fix priority for local search startpoints
#1503
dweindl
closed
3 weeks ago
2
Added a deprecated version of create_model
#1502
PaulJonasJost
closed
3 weeks ago
1
DeprecationWarning for old method `PetabImporter.create_model()`.
#1501
vwiela
opened
3 weeks ago
0
Store timestamp in pypesto.result.optimize.OptimizerResult
#1500
dweindl
opened
1 month ago
0
More memory-efficient multi-start optimization
#1499
dweindl
opened
1 month ago
0
Update citation
#1498
m-philipps
closed
1 month ago
1
Gradient check example
#1497
m-philipps
opened
1 month ago
2
Interpreting the Profile
#1496
cataschlott
closed
19 hours ago
2
Test for gradient check asserts that gradients are wrong
#1495
m-philipps
opened
1 month ago
0
Conditional variable initialisation in `AmiciObjective.check_gradients_match_finite_differences`
#1494
m-philipps
opened
1 month ago
3
AmiciObjective/PEtab import: Fix plist
#1493
dweindl
closed
2 weeks ago
2
DlibOptimizer -- don't hardcode solver_epsilon
#1492
dweindl
opened
1 month ago
1
Update references
#1491
dweindl
closed
16 hours ago
1
GHA: Fix pysb installation failures
#1490
dweindl
closed
1 month ago
1
Updated PEtab.jl to work with version 3.x
#1489
PaulJonasJost
closed
1 month ago
3
SacessOptimizer - support for recording full history
#1488
dweindl
opened
1 month ago
0
Support `sensi_orders` in gradient checks
#1487
dilpath
opened
1 month ago
1
Clean up sampling tests
#1486
PaulJonasJost
closed
1 month ago
1
Changes to codeowners discussed at retreat
#1485
PaulJonasJost
closed
1 month ago
1
GHA: trigger CI workflow on merge_group event
#1484
dweindl
closed
1 month ago
1
Fix sphinx config
#1483
dweindl
closed
1 month ago
2
sphinx-build failures `TypeError: can only concatenate str (not "_StrPath") to str`
#1482
dweindl
closed
3 weeks ago
1
Add gradient check methods to notebooks
#1481
dilpath
opened
1 month ago
0
ESSOptimizer: Fix bug in go-beyond
#1480
dweindl
closed
1 month ago
1
Update Python requirement in INSTALL.rst
#1479
dweindl
closed
1 month ago
1
GHA: Configure merge queue
#1478
dweindl
closed
1 month ago
1
ESSOptimizer: Fix recombination bug
#1477
dweindl
closed
1 month ago
2
SacessOptimizer fixes
#1476
dweindl
closed
1 month ago
1
Reduce computation and non-deterministic behaviour in evidence and sampling tests
#1475
dilpath
opened
1 month ago
0
Pypesto features updated
#1474
PaulJonasJost
closed
2 months ago
2
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