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pyPESTO
python Parameter EStimation TOolbox
https://pypesto.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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Hierarchical: avoid recomputing inner parameters if simulation failed
#1426
dilpath
closed
1 day ago
1
Lots of warnings in test suite
#1425
dweindl
opened
2 days ago
0
Fix `return_dict` when an `AmiciObjective` is inside `AggregatedObjective`
#1424
dilpath
closed
2 days ago
3
GHA: Enable dependabot for action upgrades
#1423
dweindl
closed
5 days ago
2
Update to libpetab 0.4.0
#1422
dweindl
closed
2 days ago
1
Added a lazy result object.
#1421
PaulJonasJost
opened
1 week ago
4
Numpy 2.0 compatibility
#1420
PaulJonasJost
closed
1 week ago
1
Roadrunner handling of petab issue 0019
#1419
PaulJonasJost
closed
1 week ago
1
KeyError for parameter with amici prefix
#1418
matthiaskoenig
opened
2 weeks ago
2
PetabImporter: respect `estimate=0`
#1417
dweindl
closed
2 weeks ago
0
AmiciObjective: check that sensitivities wrt all relevant parameters …
#1416
dweindl
opened
2 weeks ago
1
PetabImporter does not respect estimate=0
#1415
dweindl
closed
2 weeks ago
3
AmiciObjective: For sensi_orders>0, check that sensitivities wrt all relevant parameters are computed
#1414
dweindl
opened
3 weeks ago
0
NegLogParameterPriors does not evaluate prior density at fixed params
#1413
arrjon
closed
3 weeks ago
4
NegLogParameterPriors evaluates prior density also on fixed parameters
#1412
arrjon
closed
3 weeks ago
6
Fixing Aggregated Objective Visualisations
#1411
arrjon
closed
3 weeks ago
2
Aggregated Objective does not return expected outputs using `return_dict`
#1410
arrjon
opened
4 weeks ago
4
Visualize: visualization of estimated observable mapping
#1409
Doresic
closed
1 week ago
2
Added test for multiprocessing of roadrunner.
#1408
PaulJonasJost
opened
1 month ago
1
prepare release 0.5.2
#1407
PaulJonasJost
closed
1 month ago
2
release 0.5.2
#1406
PaulJonasJost
closed
1 month ago
1
Lazy loading of optimization results from HDF5
#1405
dweindl
opened
1 month ago
0
Update references
#1404
dweindl
opened
1 month ago
1
WIP: fix Macos-latest
#1403
PaulJonasJost
opened
1 month ago
1
fix #1401
#1402
PaulJonasJost
closed
1 month ago
1
Roadrunner petab test case 0018 fails on Mac
#1401
PaulJonasJost
closed
1 month ago
3
Fix JaxObjective
#1400
GiacomoFabrini
closed
1 month ago
1
update readme links
#1399
m-philipps
closed
1 month ago
3
Update julia objective
#1398
m-philipps
opened
1 month ago
3
`pyjulia` is no longer maintained
#1397
m-philipps
opened
1 month ago
0
Frequent readthedocs timeout
#1396
PaulJonasJost
opened
1 month ago
1
Hdf5AmiciHistory with AggregatedObjective
#1395
plakrisenko
closed
1 month ago
1
Correct header for roadrunner example
#1394
PaulJonasJost
closed
2 months ago
1
More detailed defaults for `problem.get_full_vector`
#1393
PaulJonasJost
closed
1 month ago
1
Check pypesto/sample/geweke_test.py calculate_zscore/spectrum0/spectrum
#1392
dweindl
opened
2 months ago
0
remove random.seed in favor of np.random.seed
#1391
PaulJonasJost
closed
1 month ago
1
Fix in doc of visualise.optimization_stats
#1390
PaulJonasJost
closed
1 month ago
2
Notebook on history usage and comparison of multiple results.
#1389
PaulJonasJost
closed
1 month ago
2
Fix `pypesto.sample.geweke_test.spectrum` for nfft<=3
#1388
dweindl
closed
2 months ago
0
GHA: Test macos-14
#1387
dweindl
closed
2 months ago
1
GHA: use macos-12 runner
#1386
dweindl
closed
2 months ago
0
Update `test_thermodynamic_integration`
#1385
PaulJonasJost
closed
1 month ago
2
Update deprecated amici imports
#1384
dweindl
closed
2 months ago
1
Frequent timeouts for `mac (3.11)` workflow runs
#1383
dweindl
closed
1 month ago
3
Saves pypesto and python version to the problem.
#1382
PaulJonasJost
closed
1 month ago
3
SacessOptimizer: collect worker stats
#1381
dweindl
closed
2 months ago
0
ESS optimizers: suppress divide-by-zero warnings; report n_eval
#1380
dweindl
closed
2 months ago
0
Require and test python>=3.10
#1379
vwiela
closed
2 months ago
1
Calling prior in sampling with fixed parameters does not work
#1378
arrjon
closed
1 month ago
3
Relative: fix log of zero for default 0 sigma values
#1377
Doresic
closed
2 months ago
1
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