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Since 1.40.5 I got .trim.qual files after a trim.seqs command formatted back to ASCII, although the input .qual file was already a translation of ASCII to integer Phred score.
So, any further comma…
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The mothur tools output the actual output and the log.
1. The preview of the actual data set shows the content of the log.
2. Is it possible to include the log file only if it contains any usefu…
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Thanks for your rewriting the lognormal and other distribution patterns based on macroecological distribution module. There are some mistakes in the modelsAndMetrics script: no function called negbin_…
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L64 -- reference for bacteria using env DNA
L60 -- ref for smaller animals have spores(?)
L122
L296 -- to Methods? Is it not mentioned there?
L337 - why the "Fig3" in the text?? it .. isn't
Res…
aammd updated
6 years ago
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Hi All, I installed prebuilt binary from https://github.com/mothur/mothur/releases/download/v1.39.4/Mothur.linux_64.zip and then I launched it using ./mothur and then I used below command
mothur > m…
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Is it unusual to see this variation in the abundance column?
> head(mergers[[1]])
…
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Data from: Interactions among roots, mycorrhizae and free-living microbial communities differentially impact soil carbon processes
Moore JAM, Jiang J, Patterson CM, Wang G, Mayes MA, Classen AT
…
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{
"body": {
"sections": {
"section": [
{
"@id": "sec1",
"section-title": "Introduction",
"para": [
{
…
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Hello,
I'm trying to use iRep to repeat the work of Measurement of bacterial replication rates in microbial communities . I downloaded the SRA files of premature human infant (SRP052967) and transfor…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/KonradZych/SIAMCAT
Confirm the following by editi…