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ClinVar - NCBI database containing the relationships between human variations and phenotypes http://www.ncbi.nlm.nih.gov/clinvar/
Download sources:
Complete public data set (XML): (ftp://ftp.ncbi.nlm…
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In preparation to supporting R 3.4, we are migrating any non-bio-related packages over to the conda-forge channel. This issue aims to organize and track the progress.
Below are the results of:
`…
daler updated
7 years ago
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Quoth Antonia:
"When looking at the phenotype annotations in full view I think it would be nice if the table was sorted so that the annotations for each individual phenotype:
1. sort the alleles by ty…
mah11 updated
7 years ago
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Meant to open this one yesterday...
We decided:
- [x] 1. we do not need to show the count column in the summary view, move to detailed view
- [x] 2. We are not sure if the counts need to …
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@Antonialock
http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0071171#term=ancchart
this has "imprinting" as "regulation of mating type switching"
I would have said part of (I think)
Is this regul…
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SuRE-seq, the previous dataset I was working with, is fundamentally a promoter assay, and therefore it was hard to find many biologically relevant features other than GC content (which affects nucleos…
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we need to have some examples of how to model promoters of one gene driving the expression of another.
for example, there is a zfin construct [Tg(zp3:fsta,myl7:EGFP)](http://zfin.org/ZDB-TGCONSTRCT-…
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Currently getting warnings from parsing the supported alleles of NetMHC/NetMHCpan such as:
```
root: INFO: Skipping allele SLA-1-YDL01: Malformed MHC type 1
root: INFO: Skipping allele SLA-1-YTH: Mal…
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One option would be to put only the genotype name, but not the genotype description in the title.
So this would become
cdc25-22 [not assayed] mik1-[not assayed]cdc25-9A[overexpression]
@mah11 @Anton…
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Hi,
For some analyses, like Allelic Specific Expression, one wants to have a personal version of the reference. That is the reference modified to represent the known sequence of a individual. It seem…