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Dear Dr. J. Regner,
Thanks a lot,it is a great work. I have some difficult when running the script. so I want to know if you can upload the ".rds" in your code. Thanks a lot.
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Hi,
Hi,
Hi,
Hi, I'm tryin got
**Attach your log file**
ArchR has a built-in logging functionality for all complex functions. You MUST attach your log file (indicated in the conso…
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Hi, I am trying to deploy Shiny ArchR and I have a directory under /srv/shiny-server/ShinyArchRUiO where all the shiny files reside. However, my ArchR project resides in my home directory /home/susrin…
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Hello.
Thank you for providing this platform for scRNA-seq analysis.
I have given it a try and everything worked perfectly until I got into scRNA-seq integration.
Basically, I am running this c…
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Hello team,
I am wondering if it would be possible to modify the TSSEnrichment function to allow parameters to be changed in how the TSS enrichment score is calculated, for example the size of the …
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### Description
I use rex to exploit a simple arm bug with dumbtracer
I add the following code in test_rex.py
```python
def test_linux_armel_stacksmash_jump_dumb():
path = bin_location
…
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Hi, I got the peak matrix with getMatrixFromProject() in ArchR, but I looked up the code and it seems that this peak matrix is not normalized. Can this peak count matrix be used in SCRIP enrich fun…
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Hi,
I am new in this field and currently using ArchRtoSignac to find a way to better process my scATACseq data after reading your paper. I encounter an issue related to fragment object creation. …
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If we are working with ArchR instead of Cicero, what are the key elements to prepare input data of base GRN construction?
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Hello,
i'm trying to use your package, but the conversion ArchR2Signac does'nt work.
The error message is : Erreur dans CreateFragmentObject(path = fpath, cells = cells, verbose = FALSE, :
Fra…