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upsides
- we could use bcftools instead of implementing our own code
downsides
- a lot of stuff gets pushed into the INFO fields
- ...including the END position of the haplotype lines, which…
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Hi Tian,
Hope you enjoyed the holidays. I am having this error when trying to run PRScs on `iter-900`:
```
/project/ritchie/tools/PRScs/mcmc_gtb.py:55: RuntimeWarning: divide by zero encountere…
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Here is an error report for a special case, but I figure it is part of a more general issue...
I look a quick look at the [Human Lung Cell Atlas](https://www.biorxiv.org/content/10.1101/2022.03.10.…
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https://mp.weixin.qq.com/s/9NdZQof1rsMfwMbIS-LXLA
ixxmu updated
2 years ago
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## 1. Bug description
I am learning to use your tool with the example summary data provided by the package. When trying to replicate my data with your files (removing chromosome and position), the pa…
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**INPUTS**
COVARIATES: probe plus experiment covariates to control for (in the linear/logistic reg model)
linear_model( probe_dataset, phenotype, covariates (from phenotype dataset) )
- presumably …
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Hello,
So I seem to be having some issues with querying remote tabix files (e.g from ENCODE). Though I'm not sure if this is strictly related to the file being remote, or some other difference in…
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# Motivation
The COVID-19 pandemic has made clear, once again, we need robust packages, built
following best practices, Infectious Disease Epidemiology (IDE) ([Jombart
2021](https://doi.org/10.10…
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Hi,
Running GWAS_flow for first time and got stuck with this error:
Tried many things but it is not going:
Command : python gwas.py -x 1000.plink -y Pheno_GWAS_Cd_gwas_flow.csv
Update: My pheno …
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IDG sent me some info about workshops they’ve done that they have recordings for. It’s in the announcements, but they would also like them added to the training website. So adding an IDG tab to this p…