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theislab
/
zellkonverter
Conversion between scRNA-seq objects
https://theislab.github.io/zellkonverter/
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H5MU to Multi Assay Experiment object
#130
JHYSiu
closed
1 week ago
1
Speed up writeH5AD
#129
stemangiola
opened
1 week ago
5
Bump JamesIves/github-pages-deploy-action from 4.6.8 to 4.6.9
#128
dependabot[bot]
closed
2 weeks ago
0
Bump actions/checkout from 3 to 4
#127
dependabot[bot]
closed
1 month ago
0
Bump JamesIves/github-pages-deploy-action from 4.1.4 to 4.6.8
#126
dependabot[bot]
closed
1 month ago
0
Prepare for Bioconductor 3.20 release
#125
lazappi
closed
1 month ago
0
Update AnnData2SCE.R
#124
GabrielHoffman
closed
1 month ago
2
Error reading `raw` with `use_hdf5 = TRUE`
#123
GabrielHoffman
closed
1 month ago
8
Factor with missing levels lead to one-off errors
#122
const-ae
closed
1 month ago
7
After running sc.experimental.pp.recipe_pearson_residuals, I encountered a warning when running sc.tl.rank_genes_groups.
#121
Always-Stude
closed
3 months ago
2
Error with datatype in X when reading in with readH5AD
#120
ecwheele
closed
1 month ago
2
Error creating conda environment package __glibc conflicts for: @/linux-64::__glibc==2.28=0 python=3.7.7 -> libgcc-ng[version='>=7.3.0'] -> __glibc[version='>=2.17']
#119
Marwansha
closed
1 month ago
2
Unable to configure environment
#118
liuweihahaha
closed
1 month ago
2
"Error in .Call2("C_h5mread", filepath, name, starts, counts, noreduce, : H5Dread() returned an error"
#117
zipy124
closed
1 month ago
6
Conversion Error: Conversion from numpy array type 20 is not supported with reticulate >= 1.36.0
#116
zipy124
closed
5 months ago
4
Values in SCE metadata are lost
#115
lucas02061
closed
8 months ago
2
‘X' matrix does not support transposition and has been skipped
#114
GabrielHoffman
closed
8 months ago
8
Error in if (ncol(m)) { : argument is of length zero
#113
spatts14
closed
4 months ago
12
double free or corruption (out)
#112
Flu09
closed
5 days ago
8
problem with the Delayed Array matrix
#111
Marwansha
closed
1 month ago
2
CITE-Seq Support for Zellkonverter
#110
viktorzou
closed
9 months ago
3
Use R devel in GitHub actions
#109
lazappi
closed
10 months ago
0
Segfaults with CRAN R, BioC 3.18, and fresh Anaconda Install
#108
berniejmulvey
closed
10 months ago
2
using mamba solver for conda
#107
LinearParadox
closed
1 month ago
6
Problem at Zellkonverter finding conda environment
#106
Yanst86
closed
1 month ago
3
Error in `SCE2AnnData()` if row/col data is empty
#105
lazappi
opened
11 months ago
0
Object to convert is not a Python object
#104
ramadatta
closed
1 month ago
6
seeming error in basilisk.R
#103
vjcitn
closed
1 year ago
1
read_h5ad issue ( python reader raise issue , R reader work but dont read the meta data while raise this warning Warning message: In value[[3L]](cond) : setting 'colData' failed for 'adata1.h5ad': cannot coerce class "list" to a DataFrame
#102
Marwansha
closed
1 year ago
1
.
#101
Marwansha
closed
1 year ago
0
Minor typo in documentation
#100
RamRS
closed
1 year ago
1
Error in py_ref_to_r(x) : negative length vectors are not allowed
#99
ainefairbrother
closed
1 year ago
8
'X' matrix does not support transposition when using scanpy$datasets$pbmc3k()
#98
vjcitn
closed
11 months ago
2
altExps not being written to .h5ad file with writeH5AD
#97
ScreachingFire
opened
1 year ago
1
'x@assays' is not parallel to 'x'
#96
lazappi
closed
1 year ago
3
segfault when converting h5ad to SCE
#95
joseph-siefert
closed
1 month ago
4
ImportError: /lib64/libstdc++.so.6: version `CXXABI_1.3.9' not found
#94
jenellewallace
closed
1 year ago
3
read dimnames correctly when using 'native' input
#93
mtmorgan
closed
1 year ago
2
High RAM peak while loading h5ad.
#92
ilibarra
closed
1 month ago
2
'colnames': INTEGER() can only be applied to a 'integer', not a 'double'
#91
amoyguang1
closed
1 year ago
17
Add rcannood as a contributor
#90
rcannood
closed
1 year ago
0
Error in installConda() : conda installation failed with status code '2'
#89
maqingyue
closed
1 year ago
2
Add rcannood as contributor?
#88
lazappi
closed
1 year ago
1
Problem with missing values in AnnData 0.8.0
#87
jackkamm
closed
1 year ago
1
Fix categorical (factor) handling in native R reader
#86
jackkamm
closed
1 year ago
14
writeH5AD: Issue about arm64 (M1 macbook user)
#85
david-priest
closed
1 year ago
5
udunits2-deactivate.sh: [[: not found
#84
royfrancis
closed
1 year ago
9
Cannot coerce class "list" to a DataFrame with R reader
#83
royfrancis
closed
1 year ago
4
Installation fails on R 4.0.4
#82
royfrancis
closed
1 year ago
2
Add support for converting numpy recarrays
#81
lazappi
closed
2 years ago
0
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