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theislab
/
zellkonverter
Conversion between scRNA-seq objects
https://theislab.github.io/zellkonverter/
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Error creating conda environment package __glibc conflicts for: @/linux-64::__glibc==2.28=0 python=3.7.7 -> libgcc-ng[version='>=7.3.0'] -> __glibc[version='>=2.17']
#119
Marwansha
opened
1 month ago
1
Unable to configure environment
#118
liuweihahaha
opened
1 month ago
1
"Error in .Call2("C_h5mread", filepath, name, starts, counts, noreduce, : H5Dread() returned an error"
#117
zipy124
opened
2 months ago
4
Conversion Error: Conversion from numpy array type 20 is not supported with reticulate >= 1.36.0
#116
zipy124
closed
3 weeks ago
4
Values in SCE metadata are lost
#115
lucas02061
closed
3 months ago
2
‘X' matrix does not support transposition and has been skipped
#114
GabrielHoffman
closed
3 months ago
8
Error in if (ncol(m)) { : argument is of length zero
#113
spatts14
closed
10 hours ago
12
double free or corruption (out)
#112
Flu09
opened
4 months ago
6
problem with the Delayed Array matrix
#111
Marwansha
opened
4 months ago
1
CITE-Seq Support for Zellkonverter
#110
viktorzou
closed
4 months ago
3
Use R devel in GitHub actions
#109
lazappi
closed
6 months ago
0
Segfaults with CRAN R, BioC 3.18, and fresh Anaconda Install
#108
berniejmulvey
closed
6 months ago
2
using mamba solver for conda
#107
LinearParadox
opened
6 months ago
4
Problem at Zellkonverter finding conda environment
#106
Yanst86
opened
6 months ago
2
Error in `SCE2AnnData()` if row/col data is empty
#105
lazappi
opened
7 months ago
0
Object to convert is not a Python object
#104
ramadatta
opened
7 months ago
4
seeming error in basilisk.R
#103
vjcitn
closed
8 months ago
1
read_h5ad issue ( python reader raise issue , R reader work but dont read the meta data while raise this warning Warning message: In value[[3L]](cond) : setting 'colData' failed for 'adata1.h5ad': cannot coerce class "list" to a DataFrame
#102
Marwansha
closed
8 months ago
1
.
#101
Marwansha
closed
8 months ago
0
Minor typo in documentation
#100
RamRS
closed
8 months ago
1
Error in py_ref_to_r(x) : negative length vectors are not allowed
#99
ainefairbrother
closed
11 months ago
8
'X' matrix does not support transposition when using scanpy$datasets$pbmc3k()
#98
vjcitn
closed
7 months ago
2
altExps not being written to .h5ad file with writeH5AD
#97
ScreachingFire
opened
1 year ago
1
'x@assays' is not parallel to 'x'
#96
lazappi
closed
1 year ago
3
segfault when converting h5ad to SCE
#95
joseph-siefert
opened
1 year ago
3
ImportError: /lib64/libstdc++.so.6: version `CXXABI_1.3.9' not found
#94
jenellewallace
closed
11 months ago
3
read dimnames correctly when using 'native' input
#93
mtmorgan
closed
1 year ago
2
High RAM peak while loading h5ad.
#92
ilibarra
opened
1 year ago
1
'colnames': INTEGER() can only be applied to a 'integer', not a 'double'
#91
amoyguang1
closed
11 months ago
17
Add rcannood as a contributor
#90
rcannood
closed
1 year ago
0
Error in installConda() : conda installation failed with status code '2'
#89
maqingyue
closed
11 months ago
2
Add rcannood as contributor?
#88
lazappi
closed
1 year ago
1
Problem with missing values in AnnData 0.8.0
#87
jackkamm
closed
1 year ago
1
Fix categorical (factor) handling in native R reader
#86
jackkamm
closed
1 year ago
14
writeH5AD: Issue about arm64 (M1 macbook user)
#85
purisuto
closed
1 year ago
5
udunits2-deactivate.sh: [[: not found
#84
royfrancis
closed
1 year ago
9
Cannot coerce class "list" to a DataFrame with R reader
#83
royfrancis
closed
1 year ago
4
Installation fails on R 4.0.4
#82
royfrancis
closed
1 year ago
2
Add support for converting numpy recarrays
#81
lazappi
closed
1 year ago
0
Set R_BIOC_VERSION in GitHub actions
#80
lazappi
closed
1 year ago
0
Update GitHub actions to r-lib/actions v2
#79
lazappi
closed
1 year ago
0
`readH5AD(..., reader="R")` fails with recent AnnData formats?
#78
mtmorgan
closed
1 year ago
1
Fix CI script
#77
rcannood
closed
1 year ago
2
Fix compatibility with {anndata}
#76
rcannood
closed
1 year ago
5
Incompatibility with R {anndata}
#75
lazappi
closed
1 year ago
10
Error when converting `obs_names`
#74
simonmfr
closed
1 year ago
4
writeH5AD fails for very large datasets (> 1.5 million cells)
#73
GabrielHoffman
opened
1 year ago
1
doTryCatch style error when verbose=TRUE
#72
hoondy
closed
1 year ago
4
Error when reading .h5ad written with anndata v0.8.0
#71
alexlenail
closed
1 year ago
5
`readH5AD()` only works after Keyboard Interruption
#70
saulvegasauceda
closed
11 months ago
6
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