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theislab
/
zellkonverter
Conversion between scRNA-seq objects
https://theislab.github.io/zellkonverter/
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Error when converting `obs_names`
#74
simonmfr
closed
1 year ago
4
writeH5AD fails for very large datasets (> 1.5 million cells)
#73
GabrielHoffman
opened
1 year ago
1
doTryCatch style error when verbose=TRUE
#72
hoondy
closed
1 year ago
4
Error when reading .h5ad written with anndata v0.8.0
#71
alexlenail
closed
1 year ago
5
`readH5AD()` only works after Keyboard Interruption
#70
saulvegasauceda
closed
1 year ago
6
readH5AD issue with large dataset
#69
MarcElosua
closed
2 years ago
2
Anndata read error: Converting layers
#68
AkilaRanjith
closed
2 years ago
5
Reading `raw` data and differences between Python and R reader
#67
PeteHaitch
opened
2 years ago
6
`basilisk.R` needs to actually create the `BasiliskEnvironment` objects
#66
LTLA
closed
2 years ago
4
Issue loading H5AD distributed by Theis lab
#65
GabrielHoffman
closed
2 years ago
4
`writeH5AD`: high memory usage
#64
GabrielHoffman
closed
2 years ago
3
On disk `layers` in H5AD file
#63
GabrielHoffman
closed
2 years ago
7
Semantic conversions?
#62
ivirshup
opened
2 years ago
4
conversion between AnnData and SpatialExperiment object.
#61
giovp
opened
2 years ago
14
zellkonverter in conda environment
#60
bio-la
closed
2 years ago
3
`write_h5ad` is not happy with unnamed lists in the metadata
#59
LTLA
opened
2 years ago
1
help with specific h5ad file
#58
johnscrn
closed
2 years ago
5
Read alternative data with AnnData2SCE
#57
GabrielHoffman
closed
2 years ago
6
SpatialExperiment with writeH5AD function
#56
davidecrs
closed
2 years ago
3
dgRMatrix to dgCMatrix Conversion
#55
const-ae
closed
3 years ago
3
The first time calling writeH5AD installs more dependencies
#54
hisplan
closed
3 years ago
2
Support access to `raw` slot
#53
csoneson
closed
2 years ago
6
zarr support?
#52
ivirshup
opened
3 years ago
1
h5ad duplicate rownames
#51
kbrulois
closed
3 years ago
4
Turn sparse DelayedArray support back on
#50
lazappi
opened
3 years ago
3
Compression argument for `writeH5AD`
#49
ivirshup
closed
3 years ago
0
Began adding an R-native writer.
#48
LTLA
opened
3 years ago
2
Add arguments to select what is converted
#47
lazappi
closed
2 years ago
3
Began adding an R-native reader for H5AD files.
#46
LTLA
closed
3 years ago
11
Conversion Error: Conversion from numpy array type 20 is not supported
#45
const-ae
closed
1 year ago
10
Error in socketAccept for writeH5AD
#44
Richard0146
closed
2 years ago
11
Reverse conversion of varm in SCE2AnnData()
#43
lazappi
closed
3 years ago
0
support transposed assay data
#42
mtmorgan
closed
3 years ago
18
Support H5AD-backed matrices during the conversion.
#41
LTLA
closed
3 years ago
1
Make sure metadata is converted to dict for anndata v0.7.5
#40
lazappi
closed
3 years ago
0
Actions update
#39
lazappi
closed
3 years ago
0
ModuleNotFoundError: No module named 'anndata'
#38
mbahin
closed
3 years ago
5
Support for Anndata SparseDataset?
#37
milanmlft
closed
3 years ago
8
readH5AD() example failing
#36
milanmlft
closed
3 years ago
2
Write DelayedArray to file on the R side.
#35
LTLA
closed
3 years ago
8
Convert dgRMatrices to dgCMatrices on the R side
#34
LTLA
closed
3 years ago
20
Port backed='r' into release
#33
LTLA
closed
3 years ago
2
Skip DelayedArray matrices in SCE2AnnData()
#32
lazappi
closed
3 years ago
4
SCE2AnnData example should use zellkonverter:: prefix
#31
LTLA
closed
3 years ago
0
unable to install zellkonverter
#30
bromleyjd
closed
3 years ago
2
Improved support for HDF5 transfer
#29
LTLA
closed
3 years ago
5
Results from rank_genes_groups are not converted
#28
lazappi
closed
1 year ago
2
Use example_anndata.h5ad for tests/examples
#27
lazappi
opened
3 years ago
3
Error writing SCE with List columns in colData
#26
giovp
closed
3 years ago
5
Actions
#25
lazappi
closed
3 years ago
0
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