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Hello @bramvds ,
Since all regulons targeting fewer than 20 genes are dropped (in the modules_from_adjacencies function, why I got regulons with fewer than 20 genes?
 using the loadFile or loadCmd scripts on one node with one rank, sst crashes with an _*** Er…
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It would be helpful to write a short tutorial on STUMPI usage and discuss current limitations
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For example, motif1 -> motif2 -> motif3 and motif2 -> motif1 -> motif3 should not result in two copies of motif3, but I think it does right now.
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Given a SuccessionDiagram object SD and a dictionary of fixed node states, we should return a list of all MotifReduction objects in the SuccessionDiagram object's MotifReductionList that have the spec…
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Choose to explore and discuss one of the following project sites developed by students. A few of these are undergoing continued development this semester! Describe (in your own words) at least one si…
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For implementing composition from `lp` to `distr` (see #31) we are building a compositor pipeline. We could argue that the compositor takes multiple learners, e.g. a `surv.rpart` and a `surv.kaplan` a…
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Hi there,
thanks for the great package. It makes it very easy to run the complete SCENIC workflow.
I have SCENICprotocol setup on an HPC running SLURM, singularity (aertslab-pySCENIC-0.9.18.img…
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Hi,
I'm trying to run the pyscenic CLI, I have already managed to run the grn step and I got an output "adjacencies.tsv", but when I proceed to the ctx step I have a KeyError.
My command is the foll…
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Modifications to do and discuss:
- [x] Food web & interactions in introduction
- [x] Terminology in concept (impact vs effect)
- [x] Figure with unitary pathways
- [x] Add statement on the st…