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Currently coordinates of variants are provided in GCRh37, would it be possible to also return the coordinates in GRCh38?
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The goal is to prevent divergences of two simulations with the same seed from leaking to unrelated parts of the model through the position in the random sequence. Ideally, it should work even if one m…
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10/27/21
1. can we use variant-containing sequences as test data?
2. profile vs counts information?
answer: probability output, total counts, if multiple two then come up with per base counts, as…
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- Keightly 2005:
- http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1240079/
- intro explains some of the problems associated with identifying conserved noncoding elements (CNEs)
- Siepel 2005:
- htt…
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The position converter for the version 2 of mutalyzer was great at distinguishing between transcripts, but now does not seem to provide that function easily. Is it possible to have the previous featur…
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Hi,
I've been given some files by a colleague that are contigs from a FALCON genome assembly.
p_ctg.fa has primary contigs with headers like so:
`>000002F 000112876:B~000041082:B~000091592:B~0000730…
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For the alignment, it is desired that we have sequences for all eligible terms, and that these sequences reflect certain modifications to sequence such as removed signal peptides. Such information is …
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Specify the font name in title with a short description of the bug.
Please report any issue related to Noto fonts [here](https://notofonts.github.io/reporter.html). (not relevant, this is for script…
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| | |
|--------------------|----|
| Bugzilla Link | [PR30198](https://bugs.llvm.org/show_bug.cgi?id=30198) |
| Status | NEW |
| Importance | P normal |
|…
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Test example contains aligned 56 chloroplast sequences downloaded from NCBI. There are 60 partitions (genes and concatenated inter gene regions).
Running that calculations hangs around iteration 6000…