PacificBiosciences FALCON issues

PacificBiosciences / FALCON

FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries

https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries

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issues

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error "failed multiprocessing" at the step rawreads__tan_apply

#720 fengli-eGen closed 2 years ago
4
How to skip repeat mask step?

#719 ttian627 opened 2 years ago
0
what are the corrected reads?

#718 ttian627 opened 2 years ago
0
FALCON ERROR: FC_RUN.CFG

#717 rokalca closed 2 years ago
0
Falcon unzip mechanisms

#716 mentorlg opened 2 years ago
0
Available input for Falcon-Unzip

#715 mentorlg closed 2 years ago
1
Hi , i meet the error : Task Node(0-rawreads/build) failed with exit-code=1

#714 lsj11211 closed 3 years ago
3
Unable to run my PacBio data with snakemake and pbassembly

#713 wjj666 closed 3 years ago
1
quiver-run failed at variantCaller

#712 yanboANU closed 3 years ago
1
AttributeError: 'DiGraph' object has no attribute 'node' (and a vicious networkx cycle)

#711 goeckeritz opened 3 years ago
1
Failed to parse config "fc_run.cfg"

#710 linshengnan2020 closed 3 years ago
1
[ERROR]Task Node(0-rawreads/build) failed with exit-code=256

#709 cwarden45 closed 3 years ago
21
Exception: Some tasks are recently_done but not satisfied: {Node(0-rawreads/repa/rep-combine)}

#708 shannonekj closed 3 years ago
2
Assembly with example data on slurm failed: {Node(0-rawreads/build)}

#707 sadikmu closed 3 years ago
6
LAmerge: System error, read failed!

#706 cassondranewman opened 4 years ago
1
Is preads4falcon.fasta the error corrected reads?

#705 aboyher closed 4 years ago
9
questions about speed and ONT reads

#704 mycecilia opened 4 years ago
0
problems while 2-asm-falcon

#703 X-WJ closed 3 years ago
3
FALCON on PBSPro 0-rawreads/tan-runs/tan_003 fails with datander error

#702 bifxcore opened 4 years ago
1
pb-assembly fails at 2-asm-falcon stage with unclear error

#701 charlesfeigin closed 4 years ago
2
Running Test cfg fails

#700 KarlFetter closed 4 years ago
1
Quiver-chunks not completing

#699 NicMAlexandre closed 4 years ago
3
[falcon-unzip] ctg_list file generated, but nothing in the file

#698 chanikyu closed 4 years ago
2
[ERROR]Task Node(2-asm-falcon) failed with exit-code=1

#697 liufeibio closed 4 years ago
3
fc_unzip.py run error

#696 wuxiaopei0509 closed 4 years ago
1
Unable to run my PacBio data

#695 crkmary closed 4 years ago
1
falcon-unzip error :Call 'which gcpp' returned 256

#694 wuxiaopei0509 closed 4 years ago
1
FALCON runs, Unzip doesn't, but I can't find the error

#693 michaeljmetzger closed 4 years ago
12
Job Failure Initial Steps

#692 mbcouger closed 4 years ago
2
SLURM parameters to submit falcon assembly

#691 scauet closed 4 years ago
3
How to modify configure file to specify RAM and CPU number

#690 feixue1039 closed 4 years ago
1
running falon.unzip is wrong

#689 wuxiaopei0509 closed 4 years ago
3
pkg_resources.DistributionNotFound

#688 wuxiaopei0509 closed 4 years ago
1
Exception: Call '/bin/bash user_script.sh' returned 256.

#687 llengcn closed 5 years ago
2
Failed to set up logging / MissingSectionHeaderError

#686 AlBaarS opened 5 years ago
1
[ERROR]Task Node(0-rawreads/build) failed with exit-code=1

#685 NicMAlexandre closed 5 years ago
3
overlap between contigs

#684 wawjcwxy opened 5 years ago
0
poor result and preassembled_yield

#683 ptranvan closed 5 years ago
2
Meaning of gfa outputs

#682 gbdias closed 5 years ago
2
Problem of Python version on cluster

#681 Lcornet closed 5 years ago
0
subjobs pending status Eqw

#680 Lcornet closed 5 years ago
1
Exception: Some tasks are recently_done but not satisfied: set([Node(0-rawreads/daligner-runs/j_2259)])

#679 nsgarcia27 closed 5 years ago
0
ERROR:ailed to kill job for heartbeat (which might mean it was already gone)

#678 Hongchang-Gu closed 5 years ago
7
Task Node(0-rawreads/tan-runs/tan_005) failed with exit-code=1

#677 amnag closed 5 years ago
2
daligner: time estimates

#676 aechchiki closed 5 years ago
0
falcon_unzip result

#675 lijingjing1 closed 5 years ago
1
[ERROR]Some tasks are recently_done but not satisfied: set([Node(0-rawreads/tan-runs/tan_004), Node(0-rawreads/tan-runs/tan_001)])

#674 laguda-1996 closed 3 years ago
4
Make build and dust job step configurable

#673 mp15 closed 3 years ago
3
pytest failures

#672 mestia closed 5 years ago
5
Can't start assembly jobs for the latest version of falcon

#671 fayina closed 5 years ago
1