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Hi Yupeng,
I am very much interested in trying using Methylpy, but I am not familiar with Python and I am stuck with an error that I am not able to fix.
I am running this command:
```
$ methy…
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Hi Botond,
I was in a trouble when I tried to run sankefile like this:
`$ snakemake --use-conda -j 4 all`
**Error Report**:
```
Building DAG of jobs...
MissingInputException in line 23 of …
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I'm running tephra using potato genome
` nohup tephra all -c tephra_config.yml &`
This is the config file, the rest is as default
```
~/tephra/tephra-0.12.2/config$ cat tephra_config.yml
…
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We discussed possible things to explore.
1. excision rate higher than transposition rate
2. fitness as function in inserted transposons, not total number of active transposons
3. add more classes…
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Denis' email 28.6.:
For the transposition process, it would be easier to draw the total number of new transposons from a Poisson distribution with parameter u*nTot (where nTot is the total number …
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[OBI:0100026 organism](http://purl.obolibrary.org/obo/OBI_0100026) was never in OBI scope but was required for various tasks. It's defined as equivalent to Viruses or Bacteria or Archaea or Eukaryota.…
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Transposition should be duing reproduction as separate process for
- diploid ascii (sexual reproduction)
- haploid clones (asexual reproduction)
This will allow background jumps during sexual …
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Just to update on this:
-I had a look at phytozome, it looks like most of the annotations haven't changed.
-I've written a script which calculates introns from the phytozome, and uploaded the res…
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Just below the `root` there is an `unclassified` node that shall be discarded from the very beginning of the process.
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Thanks for all your efforts in establishing such wonderful TE references for Drosophila. I tried to use the [file](https://github.com/bergmanlab/transposons/blob/master/misc/D_mel_transposon_sequence_…
BioWu updated
6 years ago