-
### treelib.tree.NodeIDAbsentError: Parent node '...' is not in the tree
Running this code:
```python
from treelib import Node, Tree
class Apple():
def __init__(self, name):
…
-
If, for whatever reason, fastme creates an empty tree file then OrthoFinder crashes when it tries open the file (as the newick tree reader throws an exception):
> Best outgroup(s) for species tree
…
-
hi,
Your program works very well. But I have another related problem to ask for you.
I create a tree. The script is the following:
`tree = Tree()`
`tree.create_node("HH", "hh")`
`tree.create…
-
Hi,
I am new to Orthofinder!
I was trying to install Orthofinder on Ubuntu 14.04 LTS using the source code: "OrthoFinder-1.1.8_source.tar.gz". As per the Installation guide I have installed all …
-
Example:
```
>>> from treelib import Tree
>>> tree = Tree()
>>> tree.create_node('a', 'a')
>>> tree.create_node('b', 'b', parent='a')
>>> tree.show()
a
└── b
>>> tree.move_node('a', 'b')
>…
-
Hi,
I am running OrthoFinder by using -b option and 18 species like this:
/gpfs0/home/lzb0021/orthofinder/OrthoFinder-1.1.4/orthofinder -b /gpfs0/home/lzb0021/ouc2/Results_Apr27/WorkingDirectory …
-
Hi,
I am now working on a particular genome, and I would like to keep the order of genes (a gene is a leave) and display coverage values across environmental samples! Exciting.
Ozcan, I don't know i…
-
Hello!
I'm running **cuckoo 2.0.3 and 1.3-NG** (Spender Sandbox). Also i'm testing **2.0.4a5**
The host machine is a MacBook Pro with **OS X Sierra 10.12.6**.
Everything works fine except the sni…
-
Hi
I intend to use the release version on your website (https://www.cs.hmc.edu/~yjw/software/dlcpar/) as you suggested. However, I was just trying the github version and I encountered a problem where…
-
https://github.com/Konard/sbt
AVL:
https://en.wikipedia.org/wiki/AVL_tree
http://www.youtube.com/watch?v=5C8bLQBjcDI&feature=related
https://ru.wikipedia.org/wiki/%D0%90%D0%92%D0%9B-%D0%B4%D0%B5%D1%8…