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Hi all,
After setting an exchange reaction as objective, I call model.optimize().
But when I call model.summary() , it returns this error, instead of the usual summary() output:
```python
# …
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Hello everyone,
I'm looking for ways to minimize biomass without reaching 0 flux (dies), and maximizing another flux.
I read about pfba, but I'm not sure how to apply it in this case. Because I ha…
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See tittle.
fvdsn updated
7 years ago
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pick these variables directly from model.variables, remove _reset_var_cache
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We need a method on model to do what `model.optimize` does but which doesn't create a full solution to avoid the need for calling `model.solver.optimize` directly, and provide a method that we can doc…
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Ubuntu 16.04
Python 3.5.2
solver: cplex
I have tried flux variability analysis with cameo and cobra. But their results are different. I report my experiment in [this notebook](https://github.com/…
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Ubuntu 16.04
Python 3.5.2
solver: cplex
As I mention in this issue #114 cameo FVA runs slower although documentation claim [reverse](http://cameo.bio/04-analyze-models.html). Moreover, I observe …
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**Run 1**: FVA on Recon 2 network with some custom objective function with no additional constraints to those already come with the model. This run takes 3-4 mins.
**Run 2**: Add the following thre…
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Since there was some agreement on making pandas a hard requirement, shall we make FVA return a data frame? Other methods as well, where applicable?
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