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Reviewer: 3
Comments to the Author
Review of Zhi et al "Deconvolution of multiple infections in Plasmodium falciparum from high
throughput sequencing data"
This paper describes how to infer t…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Liubuntu/SeqSQC
Confirm the following by editing …
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Comments to the Author
The reconstruction of genomic sequences from mixed populations of pathogens from NGS data is highly relevant, as the most abundant haplotype not necessarily is most relevant or…
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Hi, I am a staff in DCH. Now, we are testing the hail software and meet some test errors .
1. How to check the results of some commands? such as, annotatesamples. For example, if you run this comman…
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I'm confused. How is the breeding score calculated?
I have one female rex and two male. Both males are nearly identical - except for one stat. The breeding planner now gives me two possible pairings …
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Hi @fgvieira
I have run `doGlf 3` for each chromosome using angsd. In order to estimate inbreeding coefficient, I think I should merge the binary glf.gz together from each chromosome, but I do not…
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Comments to the Author
The authors have developed a tool, DEploid, to infer the number of strains in a mixed infection of Plasmodium falciparum, the relative proportion of each strain and their respe…
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I was able to run data through vcf2smc and estimate. The resulting json file looks correct. However, I cannot plot it. I get the following error:
[lwhitacr@lewis4-r710-login-node223 MDTM.combined.a…