popgenmethods smcpp issues

popgenmethods / smcpp

SMC++ infers population history from whole-genome sequence data.

GNU General Public License v3.0

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issues

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How to use docker to deliver tasks instead of running locally

#260 KKFFCC opened 1 month ago
1
How to evaluate Ne estimates with different parameters

#259 djeffares opened 2 months ago
0
Running smc++ on genome with scaffold level assembly

#258 ModiShrushti opened 5 months ago
0
FloatingPointError: divide by zero encountered in log

#257 aguilar-gomez opened 5 months ago
0
vcf2smc with csi indexed mask file?

#256 mc-er opened 6 months ago
0
Running about the parameter cv

#255 tcd11221 opened 8 months ago
0
PermissionError: [Errno 13] could not open variant (vcf) file

#254 chenchengaaaaa opened 8 months ago
1
Conda install of smc++ version 0.0.0?

#253 dmacguigan opened 8 months ago
2
Please add support for `linux-aarch64` to the Conda package

#252 martin-g opened 8 months ago
2
FileNotFoundError: [Errno 2] No such file or directory: 'seaborn-ticks'

#251 sahwa closed 6 months ago
2
Cannot detect my simulated bottleneck

#250 JaneeshBansal opened 9 months ago
1
Can SMC++ analyze samples collected at different sampling times?

#249 XiaoleLei closed 8 months ago
1
RuntimeError: erroneous average coalescence time

#248 danrans123 opened 10 months ago
0
Questions about SMC++ plotting

#247 jaurbanChicago opened 11 months ago
0
Update README.rst

#246 Creeki opened 12 months ago
0
assertion error

#245 ndussex opened 1 year ago
0
docker run smc++: NotImplementedError: seek not implemented in files compressed by method 1

#244 xgdong opened 1 year ago
1
split --timepoints command is useless

#243 xiaobaiymq opened 1 year ago
0
different --knots set, different results

#242 lidanqi1990 opened 1 year ago
0
mremap_chunk(): invalid pointer

#241 zhangrengang closed 8 months ago
1
Build failed in Python 3.11

#240 tcztzy closed 8 months ago
4
add installation instructions

#239 atongsa opened 1 year ago
0
smc++ estimate Error

#238 lamlitman opened 1 year ago
1
merge multiple groups

#237 ARICE-silisi closed 8 months ago
1
error with new version 1.15.4

#236 ndussex opened 1 year ago
0
Update README.rst

#235 ThibaultLatrille opened 1 year ago
0
Update the URL of the accompanying paper

#234 lileiting opened 1 year ago
0
smc++ simulate function

#233 chongjing opened 1 year ago
0
generation time differs

#232 xuefenfei712 opened 1 year ago
1
vcf2smc Not Recognizing Population Argument

#231 BirdmanRidesAgain opened 1 year ago
0
Replace usage of set-output with $GITHUB_OUTPUT

#230 martin-g opened 1 year ago
1
ValueError: invalid file `b'smc.sorted.recode.vcf.gz'` (mode=`b'r'`) - is it VCF/BCF format

#229 lnqiao opened 1 year ago
1
Installation Path

#228 HuangseYuanli opened 1 year ago
0
Add CI based on Github Actions

#227 martin-g closed 1 year ago
2
Update to mpreal 3.6.9

#226 grahamgower closed 1 year ago
1
strange build failure with recent toolchain

#225 grahamgower closed 1 year ago
0
how to use 'plot.py' to place the legend outside the top right corner of the plot frame or plot the resulting .json files in R?

#224 yzliu01 opened 1 year ago
1
SMC++ extimate OSError

#223 zhangzb554 opened 1 year ago
0
haploid genome runing

#222 wushyer opened 1 year ago
0
Add Github Actions workflow that pushes a new Docker image to Github Docker Registry

#221 martin-g closed 1 year ago
4
Install libbz2-dev and liblzma-dev in the Docker image

#220 martin-g closed 1 year ago
5
estimate of Watterson theta

#219 Devashish13 opened 1 year ago
3
Feature request: Add support for Linux ARM64

#218 julien-faye closed 1 year ago
4
Composite likelihood: input into estimate

#217 elizeng opened 1 year ago
0
where to find exact number for effective pop size

#216 YuanwenGuo closed 2 years ago
1
SMC++ plot | The horizontal coordinate of the image result is incomplete

#215 suying77 opened 2 years ago
2
Add numpy as a build requirement

#214 grahamgower closed 1 year ago
1
split time

#213 pengyan19 opened 2 years ago
0
Suggestion: numpy should not be required for setup.py

#212 vsoch opened 2 years ago
0
most runs not finishing but program acts like they did

#211 selasphoruskershaw opened 2 years ago
0