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This will inevitably include an NGS intro, handling sequence data, and basic bioinformatics (e.g. BLAST). **Focus on species diversity through metabarcoding.**
- [ ] 27/11, I-IV, Introduction to the …
rvosa updated
7 years ago
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We should describe a standard metabarcoding pipeline for vsearch as a guide to users.
It could be based on Frédéric's metabarcoding pipeline for swarm:
https://github.com/frederic-mahe/swarm/wik…
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Minor issue. Using Swarm 2.1.12 [Feb 14 2017 19:19:01] with the following invocation
```
${SWARM} \
-d 1 -f -t ${THREADS} -z \
-i ${FINAL_FASTA/.fasta/_1f.struct} \
-s ${FINAL_FASTA…
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I am trying to think of what classes are needed and how they should be related to allow for a flexible way of manipulating taxa and items that makes the fewest assumptions about the data and the users…
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Hi,
thanks a lot for this software. The concept is very convincing to me.
I just like to ask, why the base quality score is not used during the clustering and de-replication process?
Is it not poss…