torognes vsearch issues

torognes / vsearch

Versatile open-source tool for microbiome analysis

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issues

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Enable building on any 64-bit little-endian architecture

#566 mr-c opened 1 day ago
2
Segfault with derep_id on both strands

#565 torognes opened 4 days ago
1
--fastq_ascii and --fastq_qmax must be no more than 126

#564 goodcouscous opened 2 weeks ago
1
unexpected behaviour - v 2.28 sintax chooses first sequence when not classifiable

#563 givdieri opened 1 month ago
4
centroid sequence length after clustering is different from input sequences' length which are all equal to 200n

#562 Tony-Makdissy closed 1 month ago
2
vsearch.1: typo choosen -> chosen.

#561 emollier closed 1 month ago
0
Adapt for RISC-V

#560 torognes opened 1 month ago
2
USEARCH wants to go open-source?

#559 cjfields closed 2 months ago
3
usearch_global command eats my sample IDs

#558 marchoeppner closed 2 months ago
3
is there a major vote fraction parameter of a vsearch clustered consensus sequence?

#557 ShannonDaddy closed 2 months ago
5
Can't run static binary

#556 jtremblay closed 2 months ago
3
Problem building

#555 jtremblay closed 2 months ago
1
--weak_id not working

#554 dleopold closed 2 months ago
8
Convert Qiime2 database (2 files) into fasta database (1 file) for taxonomic assignment in vsearch

#553 timz0605 closed 2 months ago
2
Question about the query file of -usearch_global command when creating OTU tables

#552 magicprotoss closed 2 months ago
6
Obtaining the expected error for each read

#551 timothevanmeter closed 6 months ago
4
Fix warnings reported by Lintian

#550 torognes closed 5 months ago
2
Consequences of using vsearch on NovaSeq data

#549 slambrechts closed 1 month ago
4
missing userfields options

#548 frederic-mahe opened 6 months ago
0
Issue related to usearch_global match

#547 NkaziN closed 6 months ago
4
vsearch --top_hits_only --maxaccepts 1 returns sometimes 2 values

#546 greboul closed 6 months ago
6
vsearch --usearch_global not showing "full alignment" instead only the segment pair

#545 gbbio closed 6 months ago
3
maxseqlength is not supported by uchime_denovo command

#544 petaripenev closed 7 months ago
6
--makeudb_usearch truncates fasta headers

#543 dleopold closed 7 months ago
3
clean-up stale branches

#542 frederic-mahe closed 7 months ago
1
Issue encountered when using vsearch --usearch_global to generate OTU frequency table

#541 timz0605 closed 5 months ago
3
src/derepsmallmem.cc: fix minor typo.

#540 emollier closed 7 months ago
1
more compile-time checks

#539 frederic-mahe closed 7 months ago
2
how to detect matches containing many ambiguous symbols?

#538 frederic-mahe closed 8 months ago
1
--uchime_denovo takes abundance information into account

#537 frederic-mahe closed 8 months ago
1
from fasta files to an OTU table

#536 frederic-mahe closed 8 months ago
1
control of 2 separate randseed events in sintax

#535 todd-desantis opened 8 months ago
10
forward read trimming and filtering (Minardi et al. 2021)

#534 frederic-mahe closed 9 months ago
1
fastq_stripleft when the resulting length is null?

#533 frederic-mahe closed 9 months ago
0
sintax output is sometimes 4 columns and other times 5 columns

#532 todd-desantis closed 8 months ago
3
compilation warning with ar: 'u' modifier ignored since 'D' is the default

#531 frederic-mahe closed 6 months ago
2
always report the rightmost match if multiple equivalent occurrences are present in target sequence? No.

#530 frederic-mahe closed 6 months ago
5
Update log file output for --chimeras_denovo command

#529 torognes closed 7 months ago
1
add a DEBUG compilation option

#528 frederic-mahe closed 10 months ago
4
fastq_mergepairs: merging stats should be written to log file if --log is used

#527 frederic-mahe closed 11 months ago
2
Too many "alignment score too low, or score drop too high" during pair-end merge compared with FLASH

#526 billzt closed 12 months ago
5
Build errors with GCC 13 on Debian 13

#525 torognes closed 10 months ago
8
Option to output the reason why merging failed

#524 torognes opened 1 year ago
0
maxseqlength is not supported by makeudb_search command

#523 javieriserte closed 10 months ago
4
Why FASTQ quality value above qmax is treated as Fatal error?

#522 billzt opened 1 year ago
6
--sizein seems having no effect in vsearch --usearch_global

#521 billzt closed 10 months ago
9
Windows binaries: working with compressed files

#520 frederic-mahe closed 2 months ago
5
appending sample names to fasta headers incomplete

#519 givdieri closed 1 year ago
1
EE: document the meaning of expected error values

#518 frederic-mahe closed 1 year ago
2
Include rows of OTUs with no mapped reads in OTU tables

#517 torognes closed 7 months ago
2