torognes vsearch issues

torognes / vsearch

Versatile open-source tool for microbiome analysis

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Greengenes2 Database Use with VSEARCH

#582 Oceazh opened 1 day ago
0
add Action to the dev branch

#581 frederic-mahe closed 4 days ago
0
Inconsistent results when using --blast6out or --uc in --usearch_global

#580 billzt closed 5 days ago
3
automatically generate markdown files and deploy Pages

#579 frederic-mahe closed 4 days ago
1
SINTAX taxonomic annotation changes when adding domain rank

#578 hempelc closed 2 weeks ago
3
--uchime_ref segmentaiton fault in 2.29.0

#577 labrat789 closed 4 weeks ago
6
Why Pairwise alignment (--allpairs_global) only support positive strand?

#576 billzt opened 1 month ago
4
Is there a way to filter fastq reads based on Qscore before paired end merging

#575 simmimourya opened 1 month ago
3
vsearch-2.29.0-linux-x86_64-static segmentation fault

#574 slw287r closed 1 month ago
5
Mismatches in taxonomic ranks with Sintax

#573 ashleyp1 closed 4 weeks ago
6
--fastq_stats: remove option --output from the list of accepted options

#572 frederic-mahe closed 2 months ago
1
--fastq_stats returns erroneous cumulated percentage for empty reads

#571 frederic-mahe closed 2 months ago
2
Very slow processing sintax vsearch/2.28.1

#570 msalamon2 opened 3 months ago
3
interpretation of --maxaccepts vsearch

#569 Robvh-git opened 3 months ago
3
Unexpected behavior when clustering short sequences

#568 vineeth-s closed 4 months ago
4
--fastx_uniques: still reachable memory under certain conditions (minor issue)

#567 frederic-mahe opened 4 months ago
1
Enable building on any 64-bit little-endian architecture

#566 mr-c closed 1 month ago
6
Segfault with derep_id on both strands

#565 torognes closed 4 months ago
2
--fastq_ascii and --fastq_qmax must be no more than 126

#564 goodcouscous opened 5 months ago
1
unexpected behaviour - v 2.28 sintax chooses first sequence when not classifiable

#563 givdieri opened 6 months ago
4
centroid sequence length after clustering is different from input sequences' length which are all equal to 200n

#562 Tony-Makdissy closed 6 months ago
2
vsearch.1: typo choosen -> chosen.

#561 emollier closed 6 months ago
0
Adapt for RISC-V

#560 torognes closed 1 month ago
4
USEARCH wants to go open-source?

#559 cjfields closed 6 months ago
3
usearch_global command eats my sample IDs

#558 marchoeppner closed 7 months ago
3
is there a major vote fraction parameter of a vsearch clustered consensus sequence?

#557 ShannonDaddy closed 7 months ago
5
Can't run static binary

#556 jtremblay closed 7 months ago
3
Problem building

#555 jtremblay closed 7 months ago
1
--weak_id not working

#554 dleopold closed 6 months ago
8
Convert Qiime2 database (2 files) into fasta database (1 file) for taxonomic assignment in vsearch

#553 timz0605 closed 7 months ago
2
Question about the query file of -usearch_global command when creating OTU tables

#552 magicprotoss closed 7 months ago
6
Obtaining the expected error for each read

#551 timothevanmeter closed 10 months ago
4
Fix warnings reported by Lintian

#550 torognes closed 10 months ago
2
Consequences of using vsearch on NovaSeq data

#549 slambrechts closed 6 months ago
4
missing userfields options

#548 frederic-mahe opened 11 months ago
0
Issue related to usearch_global match

#547 NkaziN closed 11 months ago
4
vsearch --top_hits_only --maxaccepts 1 returns sometimes 2 values

#546 greboul closed 11 months ago
6
vsearch --usearch_global not showing "full alignment" instead only the segment pair

#545 gbbio closed 11 months ago
3
maxseqlength is not supported by uchime_denovo command

#544 petaripenev closed 12 months ago
6
--makeudb_usearch truncates fasta headers

#543 dleopold closed 1 year ago
3
clean-up stale branches

#542 frederic-mahe closed 1 year ago
1
Issue encountered when using vsearch --usearch_global to generate OTU frequency table

#541 timz0605 closed 10 months ago
3
src/derepsmallmem.cc: fix minor typo.

#540 emollier closed 1 year ago
1
more compile-time checks

#539 frederic-mahe closed 1 year ago
2
how to detect matches containing many ambiguous symbols?

#538 frederic-mahe closed 1 year ago
1
--uchime_denovo takes abundance information into account

#537 frederic-mahe closed 1 year ago
1
from fasta files to an OTU table

#536 frederic-mahe closed 1 year ago
1
control of 2 separate randseed events in sintax

#535 todd-desantis opened 1 year ago
10
forward read trimming and filtering (Minardi et al. 2021)

#534 frederic-mahe closed 1 year ago
1
fastq_stripleft when the resulting length is null?

#533 frederic-mahe closed 1 year ago
0