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Dr. Sergey Koren,
As you suggested in issue 196, I used the mini kraken DB for my analyses.
While executing my following shell script, I received the following error for my samples.
1) I have two s…
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## Can I get a clue/guide please on interpreting what went wrong with MetAmos while running the run_pipeline_test.sh in the kraken step?. Everything went fine during installation but Im getting the fo…
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So I have a bunch of contigs (that were assembled from a environmental shotgun metagenome) and would like to have some taxonomical annotations assigned to them. It seems like prokka is a program that …
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Hi everyone,
I've been trying to run the test suite after installing metAMOS from the git clone of 1.5rc3.
```
$ git clone --branch "v1.5rc3" https://github.com/marbl/metAMOS.git
$ mv metAMOS/ metAM…
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Hi all.
I am currently trying to use metamos on my university HPC facility. I am receiving the following error when during the find ORFs stage.
---
************************_ERROR**_**************…
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Hello,
My run of metAMOS stops with error at various points.
If I try Preprocess and Postprocess only, it stops at Validate.
If I try Preprocess, Assemble, Postprocess only, it stops at Mapreads.
I t…
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Hi,
I getting the following error probably in the classify step:
Starting Task = classify.CLASSIFY
**\* metAMOS running command: perl -I /home/bioinfo/programas/metAMOS-1.5rc1/AMOS/Linux-x86_64/lib …
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Hi,
I have been trying to make some basic figures with phyloseq. I have first subsetted my data to the top 10 most common OTUs
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