marbl metAMOS issues - Githubissues

marbl / metAMOS

A metagenomic and isolate assembly and analysis pipeline built with AMOS

http://marbl.github.io/metAMOS

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issues

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metamos install error

#282 Mewgia opened 3 years ago
0
metAMOS INSTALL.py error

#281 fangyuanchang opened 4 years ago
3
[REAPR pipeline] Error opening file for writing ... task_pipeline.pl line 112.

#280 Hrovatin closed 4 years ago
1
Assembly always runs out of memory

#279 kspeeriful opened 5 years ago
0
Install Phylosift Issue

#278 kspeeriful closed 5 years ago
0
python INSTALL.py error

#277 bioinformaticspcj closed 6 years ago
1
**ERROR** All input sequences were empty

#276 kvaldez opened 6 years ago
4
Troubles with a Docker implementation of iMetAMOS

#275 aldembert opened 6 years ago
2
not recognizing changes to parameters

#274 eam12 opened 6 years ago
2
Steps to skip

#273 aldembert closed 6 years ago
0
add a feature for a user-defined config folder

#272 ChunfangZheng opened 7 years ago
0
syntax error when execute python2 INSTALL.py core

#271 xpingli closed 7 years ago
0
Error when running run_pipeline_test.sh (FragGeneScan, exit code -11)

#270 jwestrob opened 7 years ago
1
How to configure the settings for different tools

#269 ChunfangZheng opened 7 years ago
0
Failed at PREPROCESS with error code -6

#268 jingzhejiang closed 7 years ago
2
Deprecated dependencies

#267 geboro closed 7 years ago
1
RunPipeline: project dir does not exist!

#266 jingzhejiang closed 7 years ago
1
Some questions about the DB

#265 chen496 opened 7 years ago
0
rm: cannot remove `~/all.seq.mates': No such file or directory

#264 chen496 closed 7 years ago
2
Run test_phylosift.sh error

#263 chen496 closed 7 years ago
9
Some html reports are empty after running

#262 hyjeong opened 7 years ago
1
Run setup.py import error

#261 GLFR closed 7 years ago
2
During findorfs, the following command failed with return code -6

#260 jtallman1 opened 7 years ago
1
RunPipeline fails because "project dir does not exist"

#259 KDSR opened 7 years ago
1
fixes installation help

#258 wookietreiber closed 7 years ago
0
fixes spelling in docs

#257 wookietreiber closed 7 years ago
0
Best Linux Machine for the Binary Installation

#256 Jackie789 opened 7 years ago
1
Installation issue

#255 SilasK closed 7 years ago
1
REAPR

#254 Dangoh opened 7 years ago
8
RHEL 6.8 Install Issue.

#253 DownSouthSmartGuy closed 7 years ago
1
Paths are invalid for install

#252 ianmisner closed 7 years ago
3
psutil source path error in INSTALL.py

#251 milw closed 8 years ago
1
Error During findorfs, the following command failed with return code 2:

#250 SabeenR closed 8 years ago
7
Error while running the iMetAOS test_pipeline_test.sh

#249 SabeenR closed 8 years ago
6
Scaffold failed with return code -11

#248 KDSR opened 8 years ago
5
IndexError: list index out of range when runPipeline executed

#247 peterdfields closed 8 years ago
3
Error using test_ima.sh

#246 noellenoyes closed 8 years ago
3
Error during installation

#245 jerowe closed 7 years ago
2
Warning: library 1 has no sequences

#244 kchambers58178 closed 8 years ago
0
Scaffold step not using allocated number of threads

#243 aabood opened 8 years ago
2
During propagate MetAMOS failed with return code 134

#242 KseniaErshova opened 8 years ago
6
AttributeError: 'module' object has no attribute 'cached_phymem'

#241 ghost closed 8 years ago
8
error at the postprocess step

#240 duanjunhyq closed 8 years ago
5
metAMOS failed with return code -9

#239 osnattirosh closed 8 years ago
3
/soapdenovo.55.asm.contig' is not a readable non-empty FASTA file

#238 nortex opened 8 years ago
1
Adding diamond as classification tool - Annotate

#237 sejmodha closed 8 years ago
2
run_pipeline_test.sh gives error: ERROR: Sequence file FindORFS/in/soapdenovo.55.asm.contig does not exist

#236 nortex opened 8 years ago
1
unable to connect to host during metAmos installation

#235 assafwww closed 8 years ago
2
I have some question about using metamos

#234 kds2923 closed 8 years ago
2
segmentation fault

#233 sejmodha closed 8 years ago
17