marbl metAMOS issues - Githubissues

marbl / metAMOS

A metagenomic and isolate assembly and analysis pipeline built with AMOS

http://marbl.github.io/metAMOS

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issues

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PacBio data set error

#232 MLister1 opened 9 years ago
1
IDBA-UD multiple libraries

#231 shaman-narayanasamy opened 9 years ago
0
Not Preprocessing for some reason

#230 Biomicrogen closed 8 years ago
2
metamos-1.5rc3 errors in postprocess step

#229 yxxue closed 8 years ago
4
Velvet always runs even when not specified

#228 gotero closed 9 years ago
2
iMetAMOS failed to assemble with some read files without red error message but not all

#227 TakashiKoyama closed 9 years ago
14
Installtion check eror

#226 guliseedol closed 8 years ago
5
Functional Annotation: Blast Output vs Krona Output

#225 Kyxsune opened 9 years ago
2
Assembly outputs

#224 Vandervalh closed 9 years ago
1
Error during validate, iMetamos

#223 ptmckenney closed 8 years ago
7
Install Error

#222 Kyxsune closed 9 years ago
2
StringIndexOutOfBoundsException during Preprocess

#221 fwhelan closed 9 years ago
2
Query Annotation based on mini kraken and custom kraken Database

#220 nalandaatmi closed 8 years ago
4
Can metAMOS annotate reads instead of contigs?

#219 nalandaatmi closed 8 years ago
5
imetamos workflow issue: Error: cannot run ABySS. Required PE library but not specified. (also happens with IDBA-UD and MaSuRCA

#218 mfossen closed 9 years ago
1
Postprocess fails running statistics.pl

#217 izaakm closed 9 years ago
1
INSTALL.py cannot determine gcc version

#216 izaakm closed 9 years ago
2
MetAMOS Warning: soapdenovo2 assembler did not run successfully!

#215 TakashiKoyama opened 9 years ago
1
Questions for running Newbler in iMetAMOS

#214 TakashiKoyama closed 9 years ago
4
-bash: initPipeline: command not found

#213 zhangws119 opened 9 years ago
4
MapReads results meaning

#212 ricardomf closed 9 years ago
1
MetAMOS error "std::bad_alloc" during scaffold.SCAFFOLD

#211 drewmicro opened 9 years ago
5
INSTALL.py error: line627

#210 zhangws119 closed 9 years ago
2
Error at Annotate step

#209 Ramanandan closed 8 years ago
5
INSTALL.py error if int(version) > 1:

#208 zhangws119 closed 9 years ago
6
Error at the scaffold step when test

#207 yyq410 opened 9 years ago
5
INSTALL.py error：Missing parentheses in call to 'print'

#206 zhangws119 closed 9 years ago
2
the dir named 'scripts' not found in MetaVelvet-1.2.02.tgz

#205 yyq410 closed 9 years ago
1
Annotation error (Kraken) - Test pipeline

#204 ricardomf closed 9 years ago
2
Different databases used in metAMOS

#203 nalandaatmi closed 8 years ago
7
Error in FindORFs: cannot unlink file

#202 fwhelan closed 9 years ago
3
iMetAMOS does not show quast output

#201 TakashiKoyama closed 9 years ago
2
Error with test shell script in cluster environment

#200 nalandaatmi closed 9 years ago
5
No output after test run_pipeline_test.sh

#199 nalandaatmi closed 9 years ago
1
Error at Scaffold step for my dataset

#198 Ramanandan opened 9 years ago
10
Error at Preprocess step

#197 Ramanandan closed 9 years ago
3
insufficient memory to build full kraken database requires at least 100gb of memory using mini db

#196 Ramanandan closed 9 years ago
4
run_pipeline_test.sh

#195 FrankLee-1987 closed 9 years ago
5
error with run_pipeline_test.sh

#194 Ramanandan closed 9 years ago
12
Import error : No module named Cython.Distutils

#193 Ramanandan closed 9 years ago
7
Error in cloning into 'freebayes'....

#192 Ramanandan closed 9 years ago
4
exit on classify

#191 Biomicrogen opened 9 years ago
2
Warning messages during iMetAMOS

#190 TakashiKoyama closed 9 years ago
6
Error during validation

#189 Biomicrogen opened 9 years ago
1
New programs into metAmos Path

#188 ghoshal closed 9 years ago
2
error with run_pipeline_test.sh

#187 joachimdejonghe closed 8 years ago
2
Installation error with Python 3

#186 ghoshal closed 9 years ago
6
Assembly order

#185 sejmodha opened 9 years ago
3
Error during annotate task

#184 catnais closed 9 years ago
2
Bad start parameter (0). Start must be positive

#183 MLister1 closed 9 years ago
11

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