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marbl
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metAMOS
A metagenomic and isolate assembly and analysis pipeline built with AMOS
http://marbl.github.io/metAMOS
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Viritas
#182
shellblu
opened
9 years ago
0
run_pipeline_test.sh Fails
#181
jonathanjacobs
opened
9 years ago
1
Test suite errors.
#180
JustGitting
closed
9 years ago
9
Pipeline test: findscaffoldorf error
#179
shaman-narayanasamy
closed
9 years ago
4
Unable to run pipeline
#178
shaman-narayanasamy
closed
9 years ago
1
Installing a selected package
#177
Biomicrogen
closed
9 years ago
3
Warning: library has no sequences
#176
shellblu
closed
8 years ago
3
During mapreads, the following command failed with return code 134
#175
shellblu
closed
9 years ago
2
Preprocess error
#174
Biomicrogen
closed
9 years ago
7
Can't Reproduce results with gage data
#173
brishtiteveja
closed
9 years ago
3
More automated installation problems
#172
colinbann
closed
9 years ago
15
kraken in metAMOS v1.5rc3 fails during annotate test phase
#171
aldembert
closed
9 years ago
7
Phylosift annotation -- Krona output shows that more reads were assigned to taxons than there were in the first place
#170
TimSkvortsov
closed
10 years ago
4
MetaVelvet run with a list of k-mers produces exact copies of contigs.fa instead of different contigs
#169
TimSkvortsov
closed
10 years ago
2
FCP
#168
dumaatravaie
closed
10 years ago
0
MetAMOS 1.5rc3 - impossible to use Prokka to find ORFs
#167
TimSkvortsov
opened
10 years ago
5
Strange behaviour of preprocess module -- single reads file cannot be linked to lib%d.seq
#166
TimSkvortsov
closed
10 years ago
6
Files and folders ownership and permissions
#165
TimSkvortsov
closed
10 years ago
1
MetaVelvet freezes at (probably) "Starting Pebble Resolution..." step
#164
TimSkvortsov
closed
10 years ago
6
KronaTools
#163
dumaatravaie
closed
10 years ago
6
./run_pipeline_test.sh fails upon install from source
#162
fwhelan
closed
10 years ago
7
Metamos pipeline aborted at Scaffolding Step
#161
jvollme
closed
8 years ago
4
ABySS in MetAMOS
#160
sejmodha
closed
10 years ago
2
Metamos pipeline aborted at mapreads
#159
jvollme
closed
10 years ago
8
IDBA- Potential issue with k-mer size parameter
#158
davelin1
closed
10 years ago
1
Spades- K-mer Sizes- Potential Issue
#157
davelin1
closed
10 years ago
2
AbySS in MetAMOS-v1.5rc3
#156
sejmodha
closed
10 years ago
7
kmergenie in v1.5
#155
sejmodha
closed
10 years ago
3
wrong architecture error
#154
knightjar
closed
7 years ago
6
metAMOs fails during Scaffold step with error 134
#153
casaburi
closed
10 years ago
16
linking to Celera Assembler install
#152
jffkm
closed
10 years ago
0
abilities()
#151
hotjalapeno
closed
10 years ago
0
Does metAMOS have option to submit jobs to cluster/grid?
#150
davelin1
closed
10 years ago
1
rm '/path/Preprocess/out/all.seq.mates': No such file or directory
#149
alneberg
opened
10 years ago
6
Errors from INSTALL.py when downloading kraken db
#148
alneberg
closed
10 years ago
3
Errors after installation (frozen binaries)
#147
cresnik
closed
10 years ago
4
idba-ud assembly error file missing
#146
jffkm
closed
10 years ago
2
Fix error that occurs processing fasta files in certain situations. Sinc...
#145
davelin1
closed
10 years ago
0
Recruiting Genomes
#144
davelin1
opened
10 years ago
8
Sequences not found
#143
jffkm
closed
10 years ago
3
syntax error in kronotools install.pl
#142
jffkm
closed
10 years ago
4
test suite fails at annotate
#141
jffkm
closed
10 years ago
2
comparative analysis for multiple samples
#140
creageng
opened
10 years ago
2
Skip preprocess ?
#139
hcecilia
closed
9 years ago
2
Change Bowtie version
#138
hcecilia
closed
10 years ago
1
classfied to either bacteria or unassigned
#137
creageng
closed
10 years ago
2
ORFs sequences not found
#136
hcecilia
opened
10 years ago
3
Support trimmed and untrimmed sequencing data in one run
#135
skoren
opened
10 years ago
0
Automated installation problems
#134
creageng
closed
10 years ago
4
blastdbs directory exists but is not found
#133
hcecilia
closed
10 years ago
3
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