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pre.cluster doesn't seem to handle multiple processors (called in an earlier command) if no group information is provided. Sometimes seems to require running the exact same command twice, with explici…
ghost updated
7 years ago
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See email between Nick Gotelli and Leonora Bittleston 15 Dec 2013
- Nick Gotelli and Amanda Northrop and summer students are working on proteomic, genomic and genetic data
- Leonora Bittleston and Cha…
MKLau updated
8 years ago
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Using the following PDF as reference....
http://www.nature.com/nature/journal/v486/n7402/pdf/nature11234.pdf
Selecting the abstract text and doing a copy paste into a text editor results in a string…
dwhly updated
8 years ago
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Hello,
this may be a rather naive question, but I don't really understand how singletons are handled by DADA2. The DADA2 manuscript states that singletons can't form their own partitions, still the fi…
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The chimera.uchime command annotate sequence abundance with "/size=xx/" when uchime expect to find it in the format "/ab=xx/"
Error produced by the following command:
`mothur "#chimera.uchime(fasta=A…
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Rawls, J. F., Mahowald, M. A., Ley, R. E., Gordon, J. I. Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection. 2006.
http://dx.doi.org/1…
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Hi everyone,
I'm trying to apply FDR-adjusted test on UniFrac distances...does anyone know how to perform it?
I imagine that at first I should perfom _distance(data,"wunifrac") _ but then? Have a ni…
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Ahern, P. P.
Faith, J. J.
Gordon, J. I.
2014
Mining the human gut microbiota for effector strains that shape the immune system.
http://dx.doi.org/10.1016/j.immuni.2014.05.012
The gut microbiota codeve…
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Faith, J. J.
Ahern, P. P.
Ridaura, V. K.
Cheng, J.
Gordon, J. I.
2014.
Identifying gut microbe-host phenotype relationships using combinatorial communities in gnotobiotic mice.
http://dx.doi.org/10.11…
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Subramanian, S.
Blanton, L. V.
Frese, S. A.
Charbonneau, M.
Mills, D. A.
Gordon, J. I.
Cultivating healthy growth and nutrition through the gut microbiota. 2015.
http://dx.doi.org/10.1016/j.cell.201…