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I get the following error when running: CreateDBScheme.sh
PPO Generator:
XML definition successfully read.
[MySQL.pm 85]Transaction aborted: DBD::mysql::db do failed: Can't create database 'ModelDB…
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I am still having issues importing the models I created on ModelSEED for S. wittichii RW1 despite the fact that the recent update has solved login/account import issues. As such I just decided to try …
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Just moved to ModelSEED / Model-SEED-core and did the git clone command, and I do not find Model-SEED-core/bin/configureModelSEED.sh file.
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I was following the instructions to install the Model-SEED-core and I got a problem on this step:
c.) Load SQL-lite database from file:
sqlite3 Model-SEED-core/data/ModelDB/ModelDB.db < Model-SEED…
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For some reason, I stopped getting issue notifications once the Model-SEED-core repository got moved to the ModelSEED organization, so I've fiddled with things and am creating this issue to see if I w…
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Two things to note here....
1. Latest update has reintroduced two of the three errors that I found previously. One in FIGMODEL.pm and ModelDriver.pm where it is written parseSBMLtoTable instead of pa…
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The first problem with this scirpt is that you need to clone the repository in order to see it, and it clones the repository with it.
The git clone command does not work for me for some reason, and I…
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The database has four KEGG ids for Cytidine (cpd00367), but only one is correct (C00475)
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I've written an installation script [`bootstrap.sh`](https://github.com/devoid/Model-SEED-core/blob/7515d274cdda154a88b093c06c0b3e410bd906da/lib/ModelSEED/ModelSEEDScripts/bootstrap.sh).
Called with …
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If a genome id is first used upon import, the server fetches the genome statistics from Sapling/RAST/PubSeed and then spurges out a long list of errors for every role that _could_ be in the local data…