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I ran an MS-GF+(v2017.01.13) search using SearchGUI, and received the following errors when the output files were being generated:
Writing results...
java.lang.NullPointerException
at edu.ucsd.m…
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CI sometimes fails with issues in StopWatch_test. EG:
- line 178: TEST_EQUAL(s.getUserTime() > t_wait / 2,true): got '0', expected '1'
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I'm trying to find out how to map these features back to the percolator:
![percolator_features](https://user-images.githubusercontent.com/45520179/218236761-58d3f9ea-3129-4363-a658-eb11dce2ed74.png)
…
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Instead of whitelisting "spectra_data"
as in
```
add_test("TOPP_FeatureFinderMultiplex_1_out1" ${DIFF} -whitelist "id=" "href=" "spectra_data" -in1 FeatureFinderMultiplex_1.tmp -in2 ${DATA_DIR_TOP…
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Prompted by a discussion with @timosachsenberg, I checked the Coding Conventions page on our wiki: https://github.com/OpenMS/OpenMS/wiki/Coding-conventions
There are some conventions there that are…
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The help text mentions idXML.
Grep showed some additional cases:
```
ctd/PercolatorAdapter.ctd:
ctd/PhosphoScoring.ctd:
ctd/InspectAdapter.ctd:
ctd/MascotAdapter.ctd: …
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Hi,
We are running the following (OpenMS 2.4)
FeatureFinderMetabo -> MapAlignerClustering -> MetaboliteAdductDecharger-> FeatureLinkerUnlabeledKD -> TextExport
When looking at the consensusXM…
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Hi OpenMS team,
@abisarvepalli @mwang87 We are facing an issue with the MapAlignerPoseClustering when processing one thousands LC-MS/MS data of metabolomics experiment (non-targeted). I tried diffe…
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at least - missing
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Just visited the SpectraSTAdapter tests today and found two potential problems:
- tsv output is empty
- txt output seems to be a table (but not tab separated)
Not sure if this happens only for…