-
```
Documenting email thread here:
From Chris Mungall:
Hi Marcus
We're trying to make use of ECO in our infrastructure. We assume there is a 1:1
mapping between an ECO class and a GAF code, and that …
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Not sure if this really matters, but just wanted to address that the `Symbol` class in the new `Alphabet` machinery includes a "complement" field, which doesn't make sense for proteins or other things…
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http://www.bioinf.uni-freiburg.de/Software/LocARNA/PP/
germa updated
8 years ago
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Just a few comments on the vectorization if you want to make it generic:
1. Keep in mind that for a truly generic implementation there might be data-types that are not multiples of the vector width, e…
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SPKW:transcription antitermination
ID Transcription antitermination.
AC KW-0889
Protein involved in transcription antitermination, the
process whereby RNA polymerase is allowed to read
through …
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The subject of having molecular function terms for base pairing was discussed quite some time ago and arose again in this SF item:
[ 1585409 ] MF is_a orphan: template for synthesis of G-rich strand.…
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Hello,
I am requesting 3 new terms on behalf of colleague Dan
Haft:
new term 1
name: transcriptional attenuation
def: Regulation of transcription through variation in
where transcription terminati…
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The handling of the ontology term mapping in the sql reqo is currently quite brittle, and needs some attention. The most important issue that we need to understand is where the ontology term mapping f…
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The paper I am reading (PMID:16251348) implies that
the process nucleocytoplasmic transport only includes
protein import and mRNA export, and not the assembly
and export of pre-ribosomal complexes fr…
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name: RNA secondary structure unwinding
name space: biological_process
Def: "The process by which a secondary structure of RNA are broken or 'melted'." [PMID: 17169986]
is_a GO:0016070 ! RNA metabo…