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Hi,
When running patchDetection on a SpatialExperiment object, I get the following error:
```
Error: BiocParallel errors
1 remote errors, element index: 1
24 unevaluated and other errors
…
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Hi all,
I don't have single cell data. I want to use this tool to determine the cell type of my 10x visium data. I would like to get the top5 marker genes in each cluster instead of the top one. Wha…
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Hi!
I have been processing some 10X Visium data with [STUtility](https://ludvigla.github.io/STUtility_web_site/). The pipeline generated therein returns a Staffli object where the scaled images in …
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Hello,
I am trying to re-execute the spatial vignette here: https://satijalab.org/seurat/v3.2/spatial_vignette.html
(I specified re-execute because I ran through it successfully a month ago with…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/pachterlab/SFEData
Confirm the following by editi…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/jingeyu/CTSV
Confirm the following by editing eac…
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I get this weird rotation between image and spots
this is how I create the Spatial Experiment object
```r
path_adata
giovp updated
2 years ago
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* Check `rotateImg()` and `mirrorImg()` from `SpatialExperiment` https://github.com/drighelli/SpatialExperiment.
* @lmweber might know if we would also need to change some info in the `spatialCoords(…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/ccb-hms/MerfishData
Confirm the following by edit…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/zijianni/SpotClean
Confirm the following by editi…