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Hello,
thank you for writing ProPIP, it sounds super cool!
I am trying to use it on a fasta file with ~130 sequences and ~4000 characters as well as the correspondring tree.
When I start the run…
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Dear Andrey Zamaraev,
I will try to stay short (at least I tried). I am a biology PhD student working on topics in evolutionary and theoretical biology. I was just thinking on a project to try out …
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First issue I've done in my whole life
Edit: first line of code was not visible because I don't knon Markdown
This code simulates a continuous time Markov chain (CTMC) given some transition probab…
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### Summary of the chapter in the form of points
- This chapter focuses on **competitive environments** and **adversarial search problems**, where multiple agents have conflicting goals.
- The cha…
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I was debugging some modifications I made to mass_spring.py when I realized that the result of each run is non-deterministic. I went back to the original mass_spring.py and made sure the controller ne…
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Andrew you migth want to look at this issues, talk to Kiri to get up to speed on the problem.
Consider this simple model, it only has a single statement that samples from a unifrom distribution:
…
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Is it possible to manually control when and for how long the simulator steps? Basically I would like to use AirSim similar to [OpenAI Gym environments ](https://github.com/openai/gym) in which I get t…
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I'm planning to do some testing with the newly released ray 2.3.0 and I noticed the pettingzoo example is 9 months old and still uses gym rather than gymnasium, both should probably be updated. Will c…
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Hi
Thanks for providing this interesting package.
I am trying to test drc on a simple setup and I notice that the current implementation of drc does not work. I mean when I try it for a simple p…
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---
id: vcell
version: 7.5.0.88
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.5.0.88/biosimulators.json
specificationsPatch:
version: 7.5.0.88
image:
url: ghcr.io…