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The `data.frame` returned by `tnrs_match_names` contains columns that, as far as I can tell, always contain logical/boolean values. However, they end up being represented as characters in the returned…
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using version 2 match_names (devapi.opentreeoflife.org/v2/tnrs/match_names) with {"context":"Mammals", "names":["Peromyscus maniculatus"]} and I'm getting "Odontacarus maniculatus" as a synonym. One…
arlin updated
9 years ago
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added a study from treebase (ot_95) and the first 5-6 strains I checked that were not mapping are in OTT...at least I found them there but they are not mapping when I try to map them through curator. …
hdliv updated
8 years ago
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Species: Megalohypha aqua-dulces
Study
https://tree.opentreeoflife.org/curator/study/edit/ot_368/?tab=otu-mapping
http://www.indexfungorum.org/names/NamesRecord.asp?RecordID=505742
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```
Verify fields:
x1_genus must start with capital letter and must not have points (periods);
x1_sp1, x1_sp2, x1_sp3 must not have capital letters (only lower case) and no
points;
x1_rank1 and x1…
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Would be good to get more comments but here is starting list:
Amoebozoa
Archaeplastida, plus nested clades rhodophyceae, glaucophyta, chloroplastida
Excavata
Opisthokonta, plus nested clades Fungi an…
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For the Nexus file that is the attachment to https://groups.google.com/d/msg/opentreeoflife/Cj1tw2jWnAc/Zgpr6wpQCAAJ , a large number of names (Brian says 1/3 of them) fail to map on first attempt, an…
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Should map to Hypocreaceae
https://tree.opentreeoflife.org/curator/study/edit/pg_2466/?tab=trees&tree=tree5304
R
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```
Once data received from TNRS, align our db with correct taxonomy
Create new columns reflecting changes (accepted or corrected from synonyms)
(suggested names: f_x1_genus, f_x1_sp1, f_ x1_rank1,…
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While using a new tutorial in peyotl to test things I notices 2 genera in animals with the name Drosophila (based on the tnrs/match_names call and then taxonomy/taxon for info on the ancestral taxon).…