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In scripts/compute_core_microbiome.py and scripts/plot_semivariogram.py, the following two lines should be added at the top of the import statements (**before** the `pylab` imports):
```
from matplot…
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We decided that this shouldn't be language-specific (i.e., no _py_ in the name) and shouldn't be problem specific (e.g., QIIME implies microbial ecology).
It would be great to put all of the project…
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I want to compare two abundance tables (one bacteria, one fungi) from the same set of samples but am struggling on how to do this in R. It would be a really cool and i think important addition to phyl…
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Will get an error like the one posted at the end of this post _if_ the OTU table has some non-shared OTUs (i.e. no shared OTUs across 95% of the samples).
This is due to otu_counts and fraction_for_c…
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The [qiime_test_data](https://github.com/qiime/qiime_test_data) repository is currently separate from QIIME. I think it'd be a good idea to merge it into the QIIME repository, as this will help sync u…
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will involve update to biom format objects