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### Use Cases
1. As a user of the Platform, I want to see the history of my target of interest.
2. As a user of the Platform, I want to see a list of all species and relevant homology types for …
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I build a Pseudomonas database according to the codes on the website. After cd-hit completes, I don't get *.bak.clstr file. And after makebalstdb completes, I only get three .p* files, that is .phr, .…
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### Use Cases
1. As a user of the Platform, I would like to see the types of orthologues and paralogues that have been identified for my target of interest.
### Summary Views
![gene_tree_summ…
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Dear Authors,
This is not to raise an issue, rather a question about the process.
I find BLAST often detect multiple High-scoring Segment Pairs (HSPs) from a comparison of a pair of sequences. S…
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Hello Prof. Richard Neher @rneher
If I want to obtain all single-copy genes that are present in all the studying genomes, which alignment files should I use? (given that I use the default 1.0 for …
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Dear David,
I recently started to test Orthofinder for large scale comparative genomics in bacteria. So far so good, nevertheless I got few orthogroups that contain more than 20 proteins per strain…
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@deustp01 I'm looking at the complex [Cyclin E/A:CDK2:p-S130-CDKN1A,p-T187-CDKN1B:CUL1:SKP1:SKP2:CKS1B](https://reactome.org/PathwayBrowser/#/R-HSA-69242&SEL=R-HSA-187565&PATH=R-HSA-1640170,R-HSA-6927…
goodb updated
5 years ago
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A SWI/SNF subcomplex that incorporates two mutually exclusive paralogs, GLTSCR1 (glioma tumor suppressor candidate region gene 1) or GLTSCR1L (GLTSCR1-like), BRD9 (bromodomain-containing 9) and the …
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Hi,
I'm interested in comparing evolutionary rates between two individual phylogenies. Each of the two phylogenies are gene families with a shared common ancestor but are too divergent to align in …