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After running Masurca, I found out that the statistics from CA.mr.41.15.15.0.02.log are computed from the fasta file found in the 9-terminator folder.
In Masurca doc it is said the output is final.ge…
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child of #15
assembly has core field information for analysis (algorith namely) in the FTP file. so, we need to
* write an fTP class
* fetch the files, search for the algorithm info.
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gcc -Wall -I/public1/home/zhangxt/include -I. -Ihtslib-1.9 -c -o main.o main.c
In file included from main.c:33:
bcftools.h:42:50: error: expected ‘,’ or ‘;’ before ‘HTS_FORMAT’
void error(const …
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Hello,
masurca-3.2.7 has stopped and generated the following error in super2.err file:
``` ufasta sizes -H /ceph/sge-tmp/jnguinka/fbn.fish.gen/Assemblies/MaSuRCA/guillaumeKUnitigsAtLeast32bases_all…
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Hi,
I succesfully ran assembly with Masurca v3.2.2 and I am interested to see if I can get any improvements with the new version (v3.2.7).
However, I have an issue at the "Joining" step, the er…
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I am running masurca v3.2.3. I got an error at celera assembly step. The log report is below:
[Wed 23 May 17:16:57 BST 2018] Processing pe library reads
[Wed 23 May 17:34:23 BST 2018] Average PE r…
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Hi. Are you willing to make a Masurca binary available for Ubuntu? I'm interested in using Masurca for transcript assembly as described in the StringTie paper, but I'm surrendering after spening a cou…
bzip2 updated
6 years ago
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Hi,
I am assembling several closely related draft genomes with masurca v3.6.2 (_not_ beta) based on illumina PE-only libs. Most assemblies finish without problems but one assembly fails to create o…
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Hi
I wonder, How good this with more bigger genomes (interested in using for a plant genome with 500 MB size).
Do I need to do any modification with the commend or so?
Thanks
sampath
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Hi, my run failed during`Running assembly`. I've tried to rerun it, but got exactly the same error. Any hints?
Bests,
```
----------------------------------------START CONCURRENT Tue Mar 20 16:…