rrwick Unicycler issues

rrwick / Unicycler

hybrid assembly pipeline for bacterial genomes

GNU General Public License v3.0

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issues

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Spades in its most recent version still gives the "too old" error

#335 felince opened 6 hours ago
0
Spades assembly crashed without log error

#334 Fla1487 opened 1 month ago
3
build fails in python3.12 since distutils has gone away

#333 haslamdb opened 2 months ago
0
Error: SPAdes encountered an error

#332 louisvant closed 4 months ago
4
Assembly discrepancy with and without read dereplication

#331 pjdiebold closed 4 months ago
1
pilon out of memory error

#330 DenisGoryunov opened 6 months ago
2
Threads usage warnings

#329 tamascogustavo opened 6 months ago
0
SPAdes crashed on M1 Mac

#328 kkslow opened 7 months ago
0
Installation error or make from source

#327 AceM1188 opened 7 months ago
0
assembly error for single read R1

#326 sekhwal opened 7 months ago
0
Spurious entry in dnaA.fasta

#325 morgannprice opened 8 months ago
0
Finding overlaps with minimap... Killed

#324 jokopebri opened 8 months ago
0
Does unicycler.log contains information about genome coverage?

#323 FA387 opened 10 months ago
0
Odd results when assembling H. pylori

#322 davidaray opened 10 months ago
1
miniasm assembly failed

#321 abs-yy closed 10 months ago
1
Spades throwing read length error

#320 tomjevans closed 11 months ago
1
small contigs with less than 1 fold of coverage

#319 DorothyTamYiLing opened 1 year ago
2
Illegal Division by Zero while Building long read bridges - continued error after update v0.5.0

#318 amysiceloff opened 1 year ago
1
ler

#317 giriarteS opened 1 year ago
0
Filter contigs by depth

#316 termithorbor opened 1 year ago
0
GFA reports contig with length 0

#315 SMorrison42 opened 1 year ago
1
Update spades installed with unicycler

#314 hafizmtalha opened 1 year ago
3
Unicycler v 0.5.0 still returns ZeroDivisionError: float division by zero error

#313 cmstouthamer opened 1 year ago
1
can not detect the plasmid sequence

#312 zzsunday opened 1 year ago
0
Installation Error (Error: compilation of Unicycler's C++ component failed)

#311 ahadlaique opened 1 year ago
2
Inquiry

#310 songmj86 opened 1 year ago
0
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1:invalid start byte

#309 540889956 opened 1 year ago
1
spades --isolate automatically applied?

#308 lxsteiner opened 1 year ago
1
FileNotFoundError: [Errno 2] No such file or directory: 'bowtie2-build'

#307 hebamuh68 opened 1 year ago
0
spades error in unicycler hybrid assembly

#306 dhananyashunmugam closed 1 year ago
0
cpu count versus available cpus

#305 EricDeveaud opened 1 year ago
0
Hybrid assemblie gives more contigs than "long-read only"

#304 PauObregon opened 1 year ago
1
spades_options flag in Unicycler v0.5; valid input?

#303 tomdeman-bio opened 1 year ago
3
Determining graph multiplicity

#302 bioramg opened 1 year ago
0
RecursionError: maximum recursion depth exceeded while getting the str of an object

#301 alienzj opened 2 years ago
3
spades == Error == finished abnormally, OS return value: -9

#300 CS-CH opened 2 years ago
2
Stuck on the long read alignments step

#299 sakusankun opened 2 years ago
2
Unicycler 0.5.0 - using SPAdes 3.15 (rather than 3.14) solved issues

#298 jen517 opened 2 years ago
0
unicycler error while saving 005_bridges_applied.gfa

#297 xzguqgsntdzq opened 2 years ago
2
original_depth is zero

#296 maanmi opened 2 years ago
1
What is the rule about the origin of circular assembly when its dnaA/repA is missing?

#295 wyanren opened 2 years ago
0
the difference with Unicycler0.5.0 with Unicycle 0.4.8

#294 zjh-007 opened 2 years ago
0
Assembly variation?

#293 sekhwal opened 2 years ago
0
unicycler run

#292 krkim1989 opened 2 years ago
0
Plasmid Assembly

#291 termithorbor opened 2 years ago
0
Is "--isolate" option of SPAdes applied to all k-mer sizes?

#290 ilnamkang opened 2 years ago
3
Short and long reads from different isolates

#289 termithorbor closed 2 years ago
1
Update Unicycler

#288 termithorbor closed 2 years ago
1
AttributeError: module 'collections' has no attribute 'Hashable'

#287 BioinfoRDX closed 2 years ago
3
Simple Bridge of Long Reads "Killed"

#286 bplants10 closed 2 years ago
0