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Hi
There are a few situation that a Seurat object needs to be split (converted) into smaller Seurat objects:
- As we run different pipelines on a Seurat objects
- Merging it with other Seurat o…
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**Submitting author:** @alawryaguila (Ana Lawry Aguila)
**Repository:** https://github.com/alawryaguila/multi-view-AE
**Branch with paper.md** (empty if default branch): joss
**Version:** v1.0.0
**Edi…
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I am analysing Multiomics mouse data sequenced with 10x Genomics' Chromium technology aligned using cellranger-arc. After sample aggregation I run Seurat to process the data and end up creating a weig…
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Log:
```
========================== ERROR LOG ==========================
N E X T F L O W ~ version 22.04.5
Launching `workflows/multiomics/rna_multisample/main.nf` [agitated_cray] DSL2 - revisio…
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Hi there, thanks for the very helpful package, GLUE!
I am integrating single-cell RNA-seq and ATAC-seq data where one cluster is missing in one dataset, so the sizes of the two datasets are differ…
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https://mp.weixin.qq.com/s/-VAb0bm3fqTcPYJUAkSzAA
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Translator consortium target for implementation in Feb 2023. Exact TRAPI query templates will be created soon per Architecture meeting 2022-12-06...
**EDIT** Implementation dates:
* Jan 25: Develo…
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Hello, i'm currently analysing multiomics data accros two condition, here is my umap
![image](https://user-images.githubusercontent.com/102754023/170142171-7f4373cf-acb9-4e0e-ba11-f097927fc7f0.png…
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When running bamtagmultiome.py as part of the Snakemake ChIC workflow it cancels due to incompatibility:
line 330, in tag_multiome_multi_processing
raise NotImplementedError('A blacklist is cu…
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This is probably best done in the smartapi yaml ([3](https://github.com/biothings/BioThings_Explorer_TRAPI/blob/8d6c6071f9d3bb22bc315ace8d3aa99136bcada3/docs/smartapi.yaml#L56) [spots](https://github.…