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We've had some discussion about this before, but we
think it would be useful to add a new high-level term
'gene expression'. Perhps like this:
biological process
---[i] gene expression ; GO:new
-----…
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:D just tested ParmEd's new PR
parmed gives 4880 bond vs. 4879 cpptraj.
file: https://github.com/hainm/amber_things/tree/master/things/parmed/autobond
``` python
import pytraj as pt, parmed as pmd
…
hainm updated
8 years ago
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Currently IPR000608, Ubiquitin-conjugating enzyme, E2 is mapped to 'post-translational protein modification ; GO:0043687'
Would it be better to map to the process 'protein ubiquitination ; GO:0016567…
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```
Drop any issues with instance docs in this issue
```
Original issue reported on code.google.com by `andrewro...@googlemail.com` on 16 Oct 2008 at 3:57
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I have been meaning to submit this SF item for a while (since we discussed the granularity beneath mitochondrial translation on the reference genome call).
There are a number of terms which appeared …
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We're working again on our list of post-translational modifications as we plan to search for N-termini of which the methionine was cleaved off and which were afterwards acetylated. This is supposed to…
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John G would like to see all the children of 'post-translational protein modification ;GO:0043687' moved up to be direct children of 'protein modification process ; GO:0006464'.
Reasoning: There are …
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I had a tracker item to standardise the post-translational modification annotation (Which I think I have pretty much done, see
below), so these are probably ready to map to an ontology.
I was intendi…
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GO:0006464 cellular protein modification process has many children that describe various chemical modifications of proteins (lipidation, amidation, etc.) but also two children GO:0043686 co-transla…
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Hi
please could someone look at this part of the ontology (below) and consider including all protein amino acid modification terms (which are currently child terms of GO:0043687 post-translational pr…