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Hello,
I am attempting to replicate the results using the chromosome 22 example to verify that the code is working properly before applying it to my own data. I am running the code on a linux-based …
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We need to specify what happens when e.g.
```
GenomicPosition pos = GenomicPosition.oneBased(ctg1, Strand.POSITIVE, Position.of(4));
pos = pos.withStrand(Strand.UNKNOWN).withStrand(Strand.NEGATIV…
ielis updated
4 years ago
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Hello! Thank you for this awesome tool! In particular, I would love to be able to simulate changes in a scRNAseq data set after a single transcription factor of interest is perturbed.
From the tut…
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For a long time WBsf data has been split between the seqdbs and geneace.
For the purposes of curation I believe one beneficial option would be to move all of this data centrally into the organism s…
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Hello,
First, thanks for this tool, it's really quick and useful.
I'm working on a diagnostic call on fusions. I'm been asked to be the more sensitive even if I get false positive. In this aim, I…
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Hi,
Thank you very much for your work. Looks very interesting!
So I was trying to use my own data when I have realized that in our experiment, we have an input ChIP-seq file to correct the H3K27ac o…
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BIRD output a matrix contained all predited DH value in log scale (log2(x+1) transformed) in 200(bp) bins/windows. However, few people would interpret ATAC-seq/DNase-seq results in terms of windows. w…
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**Hello Tim and team,**
**As always thanks for your excellent work. I am in the process of using Signac to analyze some scATAC data and found the ClosestFeature function gave the following error:**
…
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https://mp.weixin.qq.com/s/OxrJxDaLKQhxMzpuZkqn9A
ixxmu updated
3 years ago