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You function do a lot, but what and how they do it is not explained, making it almost magic unless you delve into the code!
Here are some places in the documentation that might need improvement fro…
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Hi Marcio
Colin has confirmed that while this does bind DNA this is a AT-rich interactive domain-containing protein and the DNA binding is not specific enough to provide a genomic location/address.
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And refine def
(these are implicitly promoter proximal because the def already mentions promoter, this is just more precise)
Ace2_UAS
Update def: An RNA polymerase II *proximal* promoter element
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Hi, in [step 3](https://github.com/broadinstitute/ABC-Enhancer-Gene-Prediction#step-3-computing-the-abc-score) of the "Running the ABC Model" section in the `README.md` file, it says evaluation shows …
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The Alliance of Genome Resources Interactions working group would like to request several new terms for genetic interaction interactors.
We realize that there already exist the terms:
'suppresso…
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Hello there,
I am not sure if this will eventually progress into a bug report (perhaps I have just misunderstood some usage details) but I have elected to list this as an analysis question for now.…
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I am failed to show ChromHMM tracks, can you help me find the reasons?
The URL is:
http://epigenomegateway.wustl.edu/browser/?genome=hg19&datahub=ftp://cbsuftp.tc.cornell.edu/danko/hub/histone/chrom…
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Hello @jnasser3 ,
I understand ABC model can be sensitive to TSS annotation.
I am wondering what you would recommend on how to annotate TSS.
Based on your paper, one TSS is selected for each …
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#### Scientific goals
_What are the scientific goals of the analysis?_
Subtype ATRTs into SHH, MYC, TYR.
#### Proposed methods
_What methods do you plan to use to accomplish the scienti…
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Draft specification and mock up here:
Seems fairly straightforward
https://docs.google.com/document/d/1f3LeVtYe_S1R2weyFIe-cehnQR2b-uLHaqsgQxcClc4/edit
@mah11 @Antonialock
We need to figur…