suhrig arriba issues - Githubissues

suhrig / arriba

Fast and accurate gene fusion detection from RNA-Seq data

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Multimapper filter vs malformed SAM records - how many alignments is "too many"?

#243 ascidwu closed 6 days ago
11
Output fasta for TPM counting

#242 ericmalekos closed 2 weeks ago
2
custom gtf file

#241 sotaro-kanematsu opened 2 weeks ago
7
Fusion transcript mismatch between the same breakpoints

#240 gitgodgot closed 1 month ago
2
Arriba and STARfuison align

#239 xiucz closed 2 weeks ago
7
The interpretation of the contents of the result file fusions.tsv.

#238 jiaanqiang closed 2 months ago
2
Identifying gene fusions in plant genomes.

#237 jiaanqiang closed 2 months ago
3
Criteria of selecting specific transcripts

#236 sotaro-kanematsu closed 2 months ago
5
Issues with Missing Exon Coordinates Using "draw_fusions.R"

#235 Rustam86 closed 3 months ago
1
Error while running draw_fusion.R

#234 Rezwanuzzaman opened 3 months ago
8
Error occured while I running draw_fusion.R

#233 Zhengfy1022 closed 3 months ago
2
Issue with Dragen BAM encountering std::out_of_range error in version [v2.4.0]

#232 avilaHugo closed 3 months ago
8
Problem detection exom skipped

#231 zgtman closed 4 months ago
2
Single-End vs Paired-End behaviour for split1/2, discordant and coverage counts

#230 ahwanpandey closed 3 months ago
14
Finding fusions and counting supporting reads zsh: killed

#229 jdjdj0202 opened 5 months ago
17
Finding fusions and counting supporting reads zsh: killed

#228 jdjdj0202 closed 5 months ago
3
Known canonical fusion reported with zero reads - need help to understand the output

#227 renjukrishna13 closed 4 months ago
1
Error in merging adjacent breakpoints?

#226 karlestira closed 6 months ago
2
Adding more tools to plot.

#225 Nitin123-4 opened 7 months ago
1
Suppressed Sequences included in RefSeq_viral_genomes_v2.4.0.fa.gz

#224 selkamand opened 7 months ago
1
Is it possible to have draw_fusions.R output the exon number in text?

#223 ahdee closed 7 months ago
4
zsh: exec format error: ./arriba

#222 jdjdj0202 closed 7 months ago
5
Using a genome not supported

#221 gabi-ryan closed 4 months ago
3
Reference Genome

#220 bshim181 closed 3 months ago
2
Arriba output filtering

#219 teresa1997 closed 4 months ago
5
Feature request: Compatibility with Starlong

#218 adbeggs opened 8 months ago
6
coverage < split_reads

#217 Benoitdw closed 8 months ago
1
Can I use the latest Gencode GTF file ?

#216 JeWeizhong closed 8 months ago
1
The CBFB::MYH11D fusion gene is discarded by the 'blacklist' filter, but it is not found in the blacklist file.

#215 bioPG closed 9 months ago
3
Issue with the "relative_support" filter

#214 bioPG closed 9 months ago
1
total=ERROR: could not find sequence of contig 'NC_007605'

#213 jdjdj0202 closed 10 months ago
2
error: Command 'arriba' not found, did you mean: command 'ariba' from deb ariba (2.14.6+ds-3build1)

#212 jdjdj0202 closed 9 months ago
1
Missing Transcript IDs in ARRIBA Output Files

#211 bioPG closed 8 months ago
11
Fix case of -p option in documentation

#210 Redmar-van-den-Berg closed 10 months ago
1
Recommended STAR index version

#209 cpsosa closed 8 months ago
10
FastQ test data cannot be aligned

#208 Redmar-van-den-Berg closed 10 months ago
2
Recommendation for samtools bam>fastq conversion for Arriba

#207 min-codes closed 9 months ago
1
Arriba for plate-based scRNA-seq

#206 Silvia-Bio opened 11 months ago
2
Update convert_fusions_to_vcf.sh

#205 BickfordA closed 10 months ago
2
Use draw_fusions.R to only output partial plots

#204 t-pauli opened 11 months ago
1
Can one read be used to support multiple fusions

#203 acloop62hz opened 11 months ago
6
intergenic breakpoints reported without distances to genes

#202 anoronh4 closed 8 months ago
1
fix doc links

#201 Benoitdw closed 10 months ago
1
request for simulation dataset mentioned in the paper

#200 acloop62hz closed 1 year ago
2
Giving known fusions list does not recover the fusions I want

#199 acloop62hz closed 1 year ago
4
How to get the position of the fused gene on the chromosome?

#198 wiltbb closed 12 months ago
3
Validating New Versions

#197 cpsosa closed 1 year ago
4
Split reads evidence for EWSR1-NR4A3 fusion missing in sample.arriba.fusions.discarded.tsv

#196 bioPG closed 1 year ago
2
Segmentation fault on Re-aligning chimeric reads to filter fusions

#195 MelanieBroutin opened 1 year ago
3
How breakpoints should be interpreted on doubled 5' transcript end gene-fusions?

#194 alejandrogzi closed 8 months ago
2