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suhrig
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arriba
Fast and accurate gene fusion detection from RNA-Seq data
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Can one read be used to support multiple fusions
#203
acloop62hz
opened
1 year ago
6
intergenic breakpoints reported without distances to genes
#202
anoronh4
closed
11 months ago
1
fix doc links
#201
Benoitdw
closed
1 year ago
1
request for simulation dataset mentioned in the paper
#200
acloop62hz
closed
1 year ago
2
Giving known fusions list does not recover the fusions I want
#199
acloop62hz
closed
1 year ago
4
How to get the position of the fused gene on the chromosome?
#198
wiltbb
closed
1 year ago
3
Validating New Versions
#197
cpsosa
closed
1 year ago
4
Split reads evidence for EWSR1-NR4A3 fusion missing in sample.arriba.fusions.discarded.tsv
#196
bioPG
closed
1 year ago
2
Segmentation fault on Re-aligning chimeric reads to filter fusions
#195
MelanieBroutin
opened
1 year ago
3
How breakpoints should be interpreted on doubled 5' transcript end gene-fusions?
#194
alejandrogzi
closed
11 months ago
2
Error downloading reference data
#193
pagnasok
closed
1 year ago
3
EOF marker is absent. The input may be truncated
#192
picardda
closed
1 year ago
1
feat: keep exons while converting
#191
FelixMoelder
closed
1 year ago
12
possibly incorrect determination of the frame
#190
anoronh4
opened
1 year ago
5
e-value threshold
#189
notthathime
closed
1 year ago
2
Low number of structural variants
#188
yasin-uzun
closed
1 year ago
4
General question about breakpoints
#187
sermare
closed
1 year ago
1
Aligned.out.bam file empty
#186
paulwittgenstein
closed
1 year ago
13
How to calculate fusion gene expression？
#185
wiltbb
closed
1 year ago
8
Failed to read BGZF block data at offset
#184
6EMNKEY
closed
1 year ago
5
On the classification of the results about the fusion_transcript
#183
wiltbb
closed
1 year ago
4
Different gene fusions from the same alignments
#182
Gaura
closed
1 year ago
2
Gene annotation
#181
xiucz
closed
1 year ago
1
no split reads or discordant mates found
#180
kwanghoon821
closed
1 year ago
7
std::out_of_range error
#179
skanwal
closed
1 year ago
18
Does Arriba do reads downsampling by default?
#178
liuxiii
closed
1 year ago
8
Invalid file when converting fusions to vcf
#177
FelixMoelder
closed
1 year ago
1
Fusion pdf output "No coding regions due to antisense transcription"
#176
kvaldez
closed
1 year ago
2
Potentially truncated fastq?
#175
min-codes
closed
1 year ago
1
recommanded way to make custom blackfile
#174
rLannes
closed
1 year ago
2
Arriba's STAR parameters: is HardClip in "--chimOutType WithinBAM HardClip" required?
#173
toddajohnson
closed
1 year ago
2
PARAMETERS error: --chimMultimapNmax > 0 (new chimeric detection) presently only works with --chimOutType Junctions
#172
deb0612
closed
1 year ago
4
Missing transcript_id2 in filtered.fusions.tsv file + mismatches with transcript IDs in visualizations
#171
toddajohnson
closed
1 year ago
4
Utility scripts in Docker container
#170
mattdoug604
closed
1 year ago
1
Generating a Rat novergicus library
#169
GACGAMA
closed
1 year ago
10
How to get the exon number from output?
#168
bbgbb
closed
2 years ago
4
My sever can not use download_references.sh
#167
Spartanzhao
closed
1 year ago
15
Can this software get the sequence of the fusion gene?
#166
wiltbb
closed
2 years ago
4
KANSL1-ARL17A/KANSL1-ARL17B fusion detection
#165
tarfy
closed
2 years ago
2
Read identifiers not appearing in fusions.discarded.tsv
#164
14zac2
closed
2 years ago
2
Interpretation of Arriba fusion output with multiple genes in either 5'- or 3'- partners
#163
asmitagpta
closed
2 years ago
1
Detect EGFR variants and MET exon-14 skipping
#162
foxchase
closed
2 years ago
1
Difference in non-template bases in fusions.tsv versus fusions.pdf
#161
kvaldez
closed
2 years ago
2
Does this software only work on humans?
#160
wiltbb
closed
2 years ago
12
GTF file parse
#159
denise0593
closed
2 years ago
2
Minimum Support Filter Not Working
#158
DarioS
closed
2 years ago
1
arriba vs starFusion/FusionInspector and protein frame call difference
#157
alexander-e-f-smith
closed
2 years ago
5
warning of unknown gene when using supplied protein domains.gff3
#156
alexander-e-f-smith
closed
2 years ago
2
Draw_fusions.R - how to adjust the height of the coverage track?
#155
nhjk-23
closed
2 years ago
5
make fails, zlib tar archive not found
#154
SethosII
closed
2 years ago
2
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