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I was looking at some code @fefossa is writing, and came across `drop_outlier_features`, which was added in #62 but somehow escaped my notice (it isn't on in the profiling template, for example). This…
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Hello! Where can I find which markers/stains each of the 5 image channels correspond to?
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### Summary
Test how much pretraining on LINCS helps with improving OOD drug prediction on Trapnell.
### Why is this interesting?
Would allow accurate predictions of single-cell response to unsee…
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Enable the cohort creation for datasets in the following Omixatlas: TCGA, Depmap, LINCS, cBioportal, CPTAC, Immport and GDC.
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```r
metadata %>%
group_by(Metadata_dataset) %>%
skimr::skim() %>%
arrange(Metadata_dataset) %>%
filter(between(complete_rate, 0.05, 1)) %>%
group_by(skim_variable) %>%
summarise…
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The following list of cell names have more than one CLO ID.
For examples:
http://www.ontobee.org/search?ontology=LINCS-CLOview&keywords=BALL-1&submit=Search+terms
http://purl.obolibrary.org/obo/CLO_00…
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Basic idea: We want to test how much pretraining on a smaller set of genes helps for increasing performance after finetuning on a larger amount of genes.
This is relevant biologically, since common…
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Add a comment containing your interesting links and announcements here! Let us know under
which heading your post belongs (or add your own):
Critical Announcements
Events
Meeting Outcomes
Resourc…